Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   LG653_RS04085 Genome accession   NZ_CP084921
Coordinates   836508..836834 (+) Length   108 a.a.
NCBI ID   WP_002121134.1    Uniprot ID   -
Organism   Acinetobacter pittii strain CEP14     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 831508..841834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG653_RS04060 (LG653_04060) hemC 832123..833040 (+) 918 WP_057082133.1 hydroxymethylbilane synthase -
  LG653_RS04065 (LG653_04065) hemD 833044..833811 (+) 768 WP_002121177.1 uroporphyrinogen-III synthase -
  LG653_RS04070 (LG653_04070) - 833820..834662 (+) 843 WP_002121187.1 hypothetical protein -
  LG653_RS04075 (LG653_04075) - 834672..835865 (+) 1194 WP_005804098.1 membrane protein -
  LG653_RS04080 (LG653_04080) - 835873..836313 (+) 441 WP_226789402.1 thioesterase family protein -
  LG653_RS04085 (LG653_04085) hns 836508..836834 (+) 327 WP_002121134.1 H-NS histone family protein Regulator
  LG653_RS04090 (LG653_04090) gspN 837169..837912 (+) 744 WP_002121195.1 type II secretion system protein N -
  LG653_RS04095 (LG653_04095) - 837912..838748 (+) 837 WP_005079413.1 type II secretion system protein N -
  LG653_RS04100 (LG653_04100) gspD 838790..841066 (+) 2277 WP_002121232.1 type II secretion system secretin GspD -
  LG653_RS04105 (LG653_04105) - 841107..841733 (+) 627 WP_005804102.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12492.15 Da        Isoelectric Point: 5.0524

>NTDB_id=614083 LG653_RS04085 WP_002121134.1 836508..836834(+) (hns) [Acinetobacter pittii strain CEP14]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGTQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=614083 LG653_RS04085 WP_002121134.1 836508..836834(+) (hns) [Acinetobacter pittii strain CEP14]
ATGAAACCGGATATCAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGTAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTCAGTGTTGAACAACTTC
TTGAGTTTGGTACTCAAAAACGTAAGAAAACAACTCGTAAATCTGTTGAGCCTCGTTACCGCAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGCTGGTTAGTTGCTGAAATTGAAAAAGGCGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

99.074

100

0.991