Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LHA31_RS06970 Genome accession   NZ_CP084916
Coordinates   1416894..1418264 (+) Length   456 a.a.
NCBI ID   WP_035020930.1    Uniprot ID   -
Organism   Carnobacterium viridans strain AB01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1411894..1423264
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LHA31_RS06955 (LHA31_06955) - 1414500..1414676 (-) 177 WP_176944108.1 hypothetical protein -
  LHA31_RS06960 (LHA31_06960) - 1414801..1415907 (-) 1107 WP_035020934.1 ABC transporter ATP-binding protein -
  LHA31_RS06965 (LHA31_06965) - 1416136..1416675 (+) 540 WP_035020932.1 dUTP diphosphatase -
  LHA31_RS06970 (LHA31_06970) radA 1416894..1418264 (+) 1371 WP_035020930.1 DNA repair protein RadA Machinery gene
  LHA31_RS06975 (LHA31_06975) - 1418350..1419462 (+) 1113 WP_089977356.1 PIN/TRAM domain-containing protein -
  LHA31_RS06980 (LHA31_06980) ispD 1419474..1420190 (+) 717 WP_089977352.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  LHA31_RS06985 (LHA31_06985) ispF 1420209..1420706 (+) 498 WP_089977349.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  LHA31_RS06990 (LHA31_06990) gltX 1420769..1422238 (+) 1470 WP_035020923.1 glutamate--tRNA ligase -
  LHA31_RS06995 (LHA31_06995) epsC 1422566..1423096 (+) 531 WP_035020921.1 serine O-acetyltransferase EpsC -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 49728.37 Da        Isoelectric Point: 8.7979

>NTDB_id=614054 LHA31_RS06970 WP_035020930.1 1416894..1418264(+) (radA) [Carnobacterium viridans strain AB01]
MAKKKITKFVCQACGYESPKWMGRCPNCSSWNQMEEEVVADKNDRRSRVSMTGKTAKAEAIQDITVSKVPRVKTKLKELN
RVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSAQLNLAGGKVLYVSGEESSSQIKMRANRLGVKGADFYIYPETDMGAIRQ
TIEDLKPDYVIIDSIQTMNQSDINGAIGSVSQVRESTADLLKIAKTNNIAIFIVGHVTKEGSIAGPRMLEHMVDTVLYFE
GERHQTFRILRAVKNRFGSTNEIGIFEMREGGLVEVLNPSEMFLEERLSGATGSAVVASMEGSRPILAEIQSLITPTAFG
NARRTASGLDYNRVSLIMAVLEKRAGLMLQNQDAYLKSAGGVKLDEPAIDLAIAISVASSYQEKETKETDCFIGEIGLTG
EIRRVSRIEQRVNEAAKLGFKRIMIPKNNIGGWTFPENIEVIGVMTLAEAIKKAFS

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=614054 LHA31_RS06970 WP_035020930.1 1416894..1418264(+) (radA) [Carnobacterium viridans strain AB01]
GTGGCAAAAAAGAAAATTACTAAATTTGTCTGCCAAGCATGTGGGTATGAATCGCCAAAGTGGATGGGACGTTGTCCAAA
CTGTAGTAGTTGGAATCAAATGGAAGAAGAAGTAGTAGCGGATAAAAATGATCGTAGAAGTCGTGTCAGTATGACTGGCA
AAACCGCTAAAGCTGAAGCCATTCAAGACATCACAGTATCTAAAGTTCCTAGAGTGAAAACAAAGCTAAAAGAACTAAAT
CGCGTTTTAGGAGGCGGAGTAGTACCAGGCTCATTGGTTTTGATTGGTGGAGATCCTGGTATTGGAAAATCAACACTTTT
ACTGCAAGTTTCAGCACAGTTGAATTTAGCAGGCGGAAAAGTATTATATGTAAGTGGTGAGGAAAGTTCGAGCCAAATTA
AAATGCGTGCGAACCGTTTAGGTGTAAAGGGAGCAGATTTTTATATTTACCCTGAAACGGATATGGGTGCAATAAGACAA
ACAATTGAGGACTTAAAGCCTGATTATGTTATTATTGATTCTATTCAAACCATGAACCAATCCGATATTAACGGAGCAAT
AGGAAGCGTTTCTCAAGTCAGAGAAAGTACAGCTGATTTATTGAAAATTGCAAAAACAAATAATATTGCTATCTTTATTG
TAGGTCATGTTACAAAAGAAGGGTCTATTGCTGGTCCACGGATGTTGGAGCACATGGTAGACACGGTGTTGTATTTTGAA
GGAGAAAGACATCAGACTTTCCGTATTTTAAGAGCGGTTAAAAATCGATTTGGCTCAACGAATGAAATTGGGATTTTCGA
AATGCGTGAAGGCGGATTGGTAGAAGTACTGAATCCTTCGGAAATGTTTCTTGAAGAACGCTTATCTGGAGCGACAGGTT
CTGCGGTAGTGGCTTCAATGGAAGGTTCACGTCCCATTTTAGCTGAAATTCAATCGTTGATCACACCGACTGCTTTTGGT
AATGCTCGGCGGACAGCTAGTGGGTTAGATTACAATCGTGTGTCTTTAATTATGGCTGTTCTAGAGAAGAGAGCAGGGCT
GATGCTGCAAAACCAAGATGCCTATTTAAAATCAGCAGGCGGCGTTAAATTGGATGAACCAGCAATCGACTTAGCTATTG
CCATTAGTGTGGCATCCAGTTATCAAGAAAAAGAAACAAAAGAAACCGATTGTTTTATTGGCGAAATTGGGTTGACTGGA
GAAATCAGACGAGTCAGCCGGATTGAACAGCGGGTCAATGAAGCTGCTAAATTAGGGTTTAAACGAATCATGATTCCCAA
AAATAATATTGGTGGTTGGACTTTCCCTGAAAATATAGAGGTTATCGGTGTTATGACGTTAGCTGAAGCTATAAAGAAAG
CTTTTTCTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(69-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(363-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

69.298

100

0.693
  radA Streptococcus pneumoniae D39

69.298

100

0.693
  radA Streptococcus pneumoniae R6

69.298

100

0.693
  radA Streptococcus pneumoniae TIGR4

69.298

100

0.693
  radA Streptococcus mitis NCTC 12261

69.298

100

0.693
  radA Streptococcus mitis SK321

69.298

100

0.693
  radA Bacillus subtilis subsp. subtilis str. 168

68.271

100

0.684