Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   LHA31_RS03665 Genome accession   NZ_CP084916
Coordinates   745181..746899 (-) Length   572 a.a.
NCBI ID   WP_089978273.1    Uniprot ID   A0A1H1B9K6
Organism   Carnobacterium viridans strain AB01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 740181..751899
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LHA31_RS03640 (LHA31_03640) - 740234..740926 (-) 693 WP_089978276.1 response regulator transcription factor -
  LHA31_RS03645 (LHA31_03645) gndA 741210..742643 (-) 1434 WP_035021882.1 NADP-dependent phosphogluconate dehydrogenase -
  LHA31_RS03650 (LHA31_03650) - 742979..743935 (+) 957 WP_035021880.1 magnesium transporter CorA family protein -
  LHA31_RS03655 (LHA31_03655) - 744009..744140 (+) 132 WP_081896484.1 DUF4044 domain-containing protein -
  LHA31_RS03660 (LHA31_03660) msrA 744214..744864 (+) 651 WP_035021878.1 peptide-methionine (S)-S-oxide reductase MsrA -
  LHA31_RS03665 (LHA31_03665) recN 745181..746899 (-) 1719 WP_089978273.1 DNA repair protein RecN Machinery gene
  LHA31_RS03670 (LHA31_03670) argR 746934..747395 (-) 462 WP_226776701.1 arginine repressor -
  LHA31_RS03675 (LHA31_03675) - 747496..748371 (-) 876 WP_226776702.1 TlyA family RNA methyltransferase -
  LHA31_RS12980 - 748390..748884 (-) 495 WP_267462135.1 polyprenyl synthetase family protein -
  LHA31_RS12985 - 748881..749288 (-) 408 WP_267462136.1 polyprenyl synthetase family protein -
  LHA31_RS03685 (LHA31_03685) - 749304..749540 (-) 237 WP_035021867.1 exodeoxyribonuclease VII small subunit -
  LHA31_RS03690 (LHA31_03690) xseA 749537..750877 (-) 1341 WP_089978270.1 exodeoxyribonuclease VII large subunit -
  LHA31_RS03695 (LHA31_03695) folD 750996..751862 (-) 867 WP_035021862.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD -

Sequence

Protein


Download         Length: 572 a.a.        Molecular weight: 64887.88 Da        Isoelectric Point: 4.9426

>NTDB_id=614039 LHA31_RS03665 WP_089978273.1 745181..746899(-) (recN) [Carnobacterium viridans strain AB01]
MLQELTIKDFAIIQDLNLSFNRGMTVLTGETGAGKSIIIDAVGLLAGGRGSSEFIRHGATKCVLEALFSLEGNSTTYKLL
KDYDIDSEEDSVIIQRDIHRSGKNVCRINGRLVTIATLRLIGESIIDIHGQNEHQELMNPERHLNMLDHFGDQKLIQLKK
NYQETYADYKKVKKAYDKWQNGEQALAQRLDMLQYQTNEIEIAELLDGEEEELLEEKNLLANYQKIMSALSISYDTLQGD
EVNGIDLIGNAMTEMSSLEEIDEKYKVLSEAISSSYFQLQEAASDILREMDQTAYDEDRLNEIEKRLESIKQLKRKYGDS
ITEIKAYYEKIAAELNQIMNRENHLTNMTKELSHLSKELIKRGSELSEKRRVVAKKIEQAIHEQLKELYMEKVVFEVQFF
KPIQDFASENAHESGFDDVEFYIATNMGEPLKPLARVASGGELSRMMLAMKTIFSKSQGITSIIFDEVDTGVSGRVAQAI
ANKIYMVAVHSQVLCITHLPQVAAMADNHLYISKSVENDRTKTHVNSLVSLEKIEEIARMLAGTEITKLTLEHAKELTVL
AETEKQRQKQLS

Nucleotide


Download         Length: 1719 bp        

>NTDB_id=614039 LHA31_RS03665 WP_089978273.1 745181..746899(-) (recN) [Carnobacterium viridans strain AB01]
GTGCTTCAGGAATTAACCATTAAGGATTTTGCAATCATACAAGATTTGAATCTTAGTTTTAATCGTGGTATGACTGTTTT
AACCGGAGAAACAGGAGCAGGGAAATCGATTATTATTGACGCAGTTGGGCTGCTTGCAGGTGGAAGAGGATCCAGTGAAT
TTATTCGTCATGGTGCAACTAAATGTGTTTTGGAAGCGTTGTTTTCATTAGAAGGAAATTCCACTACTTATAAATTACTA
AAAGACTATGATATTGACAGTGAAGAAGATAGTGTGATTATTCAGCGTGACATTCATCGTAGTGGTAAAAATGTTTGTCG
AATCAACGGTCGTTTAGTAACGATTGCTACCTTGCGTCTAATTGGAGAATCCATCATTGATATTCACGGACAAAATGAAC
ATCAAGAATTAATGAATCCAGAACGTCATTTAAATATGTTAGATCATTTTGGTGATCAGAAATTAATACAGTTAAAAAAG
AATTATCAAGAAACTTATGCAGACTATAAAAAAGTTAAAAAAGCCTATGATAAATGGCAAAATGGAGAACAAGCATTAGC
ACAACGATTAGATATGCTTCAGTACCAAACAAATGAAATTGAAATAGCTGAACTTCTTGATGGTGAGGAAGAAGAGCTGC
TAGAAGAAAAAAATTTATTAGCTAATTATCAAAAAATTATGTCTGCACTATCCATTAGCTATGATACTTTGCAAGGAGAT
GAAGTCAATGGGATTGACTTGATTGGAAATGCAATGACTGAAATGAGTTCTTTAGAAGAAATAGATGAAAAATACAAAGT
CTTGTCAGAAGCGATTTCAAGCAGTTATTTTCAACTTCAAGAAGCTGCTAGCGATATTTTAAGAGAAATGGATCAAACGG
CCTATGATGAGGATCGCCTTAATGAAATTGAAAAAAGATTAGAGAGCATCAAACAATTAAAACGTAAATATGGTGATTCT
ATTACAGAAATCAAAGCATATTATGAAAAAATTGCGGCAGAATTAAATCAAATTATGAATCGTGAAAATCACCTGACGAA
TATGACAAAAGAGTTATCCCATTTATCGAAAGAATTGATTAAGCGAGGTAGCGAACTTTCTGAAAAGCGTAGAGTGGTAG
CCAAAAAAATTGAACAAGCCATTCATGAACAATTAAAAGAATTGTATATGGAGAAAGTGGTATTCGAAGTTCAATTTTTC
AAACCGATTCAAGATTTTGCGAGTGAAAATGCACACGAGTCTGGCTTTGATGATGTAGAGTTCTATATTGCTACAAATAT
GGGTGAACCGTTAAAACCTTTGGCTAGGGTAGCCTCTGGAGGAGAATTATCGCGCATGATGCTAGCTATGAAAACCATTT
TTTCTAAATCTCAAGGCATTACTAGTATTATATTTGATGAGGTAGATACCGGTGTTAGCGGTCGAGTCGCTCAAGCGATT
GCAAACAAAATTTATATGGTAGCTGTTCATTCTCAAGTCCTCTGCATTACACATCTGCCTCAAGTAGCTGCGATGGCTGA
TAACCATTTATATATTTCAAAAAGTGTAGAAAATGATCGTACAAAAACGCATGTCAATTCTTTGGTATCTTTAGAAAAAA
TTGAAGAAATTGCGCGTATGTTAGCAGGTACTGAAATCACAAAACTGACTTTAGAACATGCTAAAGAATTAACTGTTTTA
GCGGAAACAGAAAAACAAAGACAAAAGCAATTGAGTTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-514)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1H1B9K6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

49.823

98.951

0.493