Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   LHA31_RS03205 Genome accession   NZ_CP084916
Coordinates   637529..639343 (-) Length   604 a.a.
NCBI ID   WP_089978433.1    Uniprot ID   A0A1H1BGP1
Organism   Carnobacterium viridans strain AB01     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 632529..644343
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LHA31_RS12965 - 633333..634244 (-) 912 WP_089978818.1 RluA family pseudouridine synthase -
  LHA31_RS12970 - 634251..635045 (-) 795 Protein_622 NAD kinase -
  LHA31_RS03190 (LHA31_03190) - 635105..635764 (-) 660 WP_089978816.1 GTP pyrophosphokinase family protein -
  LHA31_RS03195 (LHA31_03195) - 635925..636497 (+) 573 WP_089978437.1 CYTH domain-containing protein -
  LHA31_RS03200 (LHA31_03200) - 636688..637374 (+) 687 WP_035022093.1 DsbA family protein -
  LHA31_RS03205 (LHA31_03205) pepF 637529..639343 (-) 1815 WP_089978433.1 oligoendopeptidase F Regulator
  LHA31_RS03210 (LHA31_03210) - 639425..639847 (-) 423 WP_226776693.1 hypothetical protein -
  LHA31_RS03215 (LHA31_03215) - 639850..640596 (-) 747 WP_226776694.1 competence protein CoiA -
  LHA31_RS03220 (LHA31_03220) - 640720..641391 (-) 672 WP_089978429.1 adaptor protein MecA -
  LHA31_RS03225 (LHA31_03225) spxA 641544..641942 (-) 399 WP_035022083.1 transcriptional regulator SpxA -
  LHA31_RS03230 (LHA31_03230) - 642374..643315 (-) 942 WP_089978426.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 69575.61 Da        Isoelectric Point: 4.9082

>NTDB_id=614032 LHA31_RS03205 WP_089978433.1 637529..639343(-) (pepF) [Carnobacterium viridans strain AB01]
MSESKKLPIRNKVPNELTWDLQVIFQSDDDFKQSYKELETKIESVISYKRTLSNGSESFLKAIQSILDLSNQLETLYVYA
QLKNDQDTTNSIYQGMYEQASKLATQANEAISWFEPEVLELSEEKIAHYFSENEDLVIYKHFIEQLTAARKHVLSANEEA
LLAGAGEIFNASSRTFNILNNADITFPTIKDEEGNNIQLSHGVYGQLMESTDRSVRESAFKQLYKVYEGLQNTFSSTLSS
HVKYHNYNAKVHHYQSAREKALSNNHIPEAVHDTLLDIVHEHLPLLHRYVALRKDLLEVEELHMYDMYTPISGEAGIKYT
YKDAQAETLKALEPLGEDYLSVLKKAFNNRWIDSIENEGKRSGAYSSGAYDTNPYILLNWHDSLNHLYTLVHELGHSVHS
YYTRTNQPYVYGDYSIFLAEIASTTNENILTDYLLETQKDPKVRAYVLNHYLDGFKGTIFRQTQFAEFEHFIHEEDAKGT
PLTSEFLSNYYSDLNARYYGPDVVKDPEIAFEWTRIPHFYYNYYVYQYSTGFSAATALAAKIVNGEEGALDNYLNYLKSG
SSDYPIEVMKKAGVDMTKKTYLEDAMKVFESRLNELEELIETLK

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=614032 LHA31_RS03205 WP_089978433.1 637529..639343(-) (pepF) [Carnobacterium viridans strain AB01]
ATGAGTGAATCAAAAAAACTGCCAATAAGAAATAAAGTACCTAATGAATTGACATGGGATTTACAAGTAATTTTTCAATC
CGATGATGATTTCAAACAATCTTATAAAGAACTTGAAACTAAAATAGAATCTGTTATATCATATAAAAGAACACTTAGTA
ATGGTTCAGAAAGTTTTTTAAAAGCTATTCAATCTATTTTAGATCTATCCAATCAATTGGAAACACTGTATGTCTATGCT
CAATTAAAAAATGATCAAGATACAACAAATTCAATTTATCAAGGAATGTATGAACAGGCCAGTAAATTAGCAACACAAGC
TAATGAAGCCATCTCATGGTTTGAACCTGAAGTTTTAGAATTGTCAGAAGAAAAAATAGCCCACTATTTTAGTGAGAATG
AAGATTTAGTCATTTACAAACATTTTATCGAACAATTAACTGCTGCTAGAAAACACGTTTTGAGTGCCAATGAAGAAGCC
TTGTTAGCAGGGGCAGGAGAAATTTTTAATGCTTCAAGTCGCACATTTAATATTTTGAATAATGCAGATATAACTTTCCC
AACCATTAAGGACGAGGAAGGAAACAATATTCAGTTATCGCACGGTGTATATGGACAACTAATGGAAAGTACTGATCGCT
CTGTCCGCGAATCAGCTTTCAAACAGTTATATAAAGTGTATGAAGGTTTACAAAATACTTTTTCAAGTACTCTTTCCTCA
CACGTTAAATACCATAATTACAATGCCAAAGTCCATCACTATCAATCTGCACGTGAGAAAGCATTAAGCAACAACCATAT
ACCAGAAGCTGTACATGATACTTTATTAGACATTGTTCATGAACATTTACCATTGCTGCATCGTTATGTTGCTTTGAGAA
AAGATCTACTAGAGGTAGAAGAACTTCATATGTACGATATGTATACTCCAATAAGTGGTGAAGCAGGAATTAAGTATACG
TATAAAGATGCCCAAGCAGAAACATTAAAAGCATTGGAACCTCTAGGTGAAGATTACTTGTCTGTACTTAAAAAAGCATT
TAATAACCGTTGGATCGACAGTATCGAAAATGAAGGGAAAAGAAGTGGTGCCTATTCTTCTGGAGCATACGACACGAATC
CTTACATCTTATTAAACTGGCATGATTCTTTAAATCATTTATATACACTGGTCCATGAGCTGGGTCATAGTGTTCACAGC
TATTATACAAGAACGAATCAACCCTATGTCTATGGTGATTATTCTATTTTCTTAGCTGAAATAGCTTCCACTACAAATGA
AAATATTTTAACGGATTATTTATTAGAGACACAAAAAGATCCAAAAGTTAGAGCTTATGTGTTGAATCATTATTTAGATG
GATTTAAAGGAACTATATTTAGACAAACTCAGTTTGCGGAGTTTGAACATTTTATTCATGAAGAAGATGCAAAAGGAACA
CCTTTAACAAGTGAGTTCTTATCAAATTATTACAGTGATTTGAATGCCCGTTATTACGGGCCAGATGTTGTGAAGGATCC
TGAAATTGCTTTCGAATGGACTAGGATACCTCATTTTTATTACAATTACTATGTTTATCAATATTCAACAGGATTTTCAG
CTGCTACAGCTTTAGCTGCTAAGATTGTCAATGGTGAAGAAGGTGCTTTAGACAACTATTTAAATTATTTGAAATCTGGA
AGCAGCGATTATCCTATTGAAGTAATGAAAAAAGCAGGCGTAGACATGACTAAGAAAACCTATCTAGAAGATGCTATGAA
AGTTTTTGAATCTAGATTAAATGAATTAGAAGAGCTTATTGAAACGTTAAAATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(117-186)

Peptidase family M3 (Peptidase_M3)

(207-587)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1H1BGP1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

53.378

98.013

0.523