Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   LHA31_RS02895 Genome accession   NZ_CP084916
Coordinates   575212..576990 (-) Length   592 a.a.
NCBI ID   WP_035022212.1    Uniprot ID   A0A1H1BL97
Organism   Carnobacterium viridans strain AB01     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 570212..581990
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LHA31_RS02875 (LHA31_02875) - 570815..571489 (+) 675 WP_411155658.1 5-bromo-4-chloroindolyl phosphate hydrolysis family protein -
  LHA31_RS02880 (LHA31_02880) - 571509..572729 (+) 1221 WP_035022216.1 toxic anion resistance protein -
  LHA31_RS02885 (LHA31_02885) - 572893..573141 (+) 249 WP_007724863.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  LHA31_RS02890 (LHA31_02890) rcrQ 573417..575183 (-) 1767 WP_197050323.1 ABC transporter ATP-binding protein Regulator
  LHA31_RS02895 (LHA31_02895) rcrP 575212..576990 (-) 1779 WP_035022212.1 ABC transporter ATP-binding protein Regulator
  LHA31_RS02900 (LHA31_02900) - 577022..577492 (-) 471 WP_226776683.1 MarR family winged helix-turn-helix transcriptional regulator -
  LHA31_RS02905 (LHA31_02905) cspD 577668..577868 (-) 201 WP_035022210.1 cold-shock protein CspD -
  LHA31_RS02910 (LHA31_02910) dapF 578028..579008 (-) 981 WP_035022208.1 diaminopimelate epimerase -
  LHA31_RS02915 (LHA31_02915) ileS 579133..581922 (-) 2790 WP_089978488.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 592 a.a.        Molecular weight: 65790.23 Da        Isoelectric Point: 5.4285

>NTDB_id=614030 LHA31_RS02895 WP_035022212.1 575212..576990(-) (rcrP) [Carnobacterium viridans strain AB01]
MLKILKYLKRKEWMMILFSVIFIVVQVYLDLELPEYMSKITQLIQIPGSKMQDIFENGGYMMLCALGSLVASFVTVFFVS
KVAAGLSRTIRSEVFTKVEGFSMEEINHFSTSSLITRSSNDVTQIQMAMSLGLQVLIKAPIMAIWAISKIVDKSWEWTLS
TAGAVGVLFLIISVVVIFALPKFKVIQTLTDNLNRVTRENLTGLRVIRAYNAENFEEEKFETANHKLMNTNLFINRIMAI
MGPGMTLIMSGLSLSIYWIGAYLINDVQLTSQASVLDRVDIFSDMVVFSSYAIQVVISFMMLTIVFIIVPRAAVSAGRIL
EVLNTKETIKDGTLTQSTQDQKGTVVFDNVSFQYPDASEAILENISFTANKGETVAFIGSTGSGKSTLVNLIPRFFDVTG
GQIKVNGQDIKEYTQKYLHSLVGFVPQKAFLFSGTVRSNVSYGDAGHEVTEADMKKAIEIAQSSDFVEKMEDGYDASISQ
SGSNVSGGQRQRLAISRAISRKPEILVFDDSFSALDYKTDRVLRAALNKELKDTTKLIVAQRIGTIRDADKIIVLDEGKI
VGIGTHQELMQTCEVYQDIAYSQLSKEELADE

Nucleotide


Download         Length: 1779 bp        

>NTDB_id=614030 LHA31_RS02895 WP_035022212.1 575212..576990(-) (rcrP) [Carnobacterium viridans strain AB01]
ATGCTAAAAATATTAAAATATTTAAAACGAAAAGAATGGATGATGATTTTATTTAGCGTTATCTTTATAGTTGTTCAAGT
CTATTTGGATTTAGAACTACCAGAATATATGTCTAAAATTACGCAACTTATTCAAATTCCGGGTTCAAAAATGCAAGATA
TATTTGAAAATGGCGGCTATATGATGCTGTGTGCTCTAGGTAGCTTAGTCGCATCTTTTGTAACAGTGTTTTTTGTTTCA
AAAGTAGCGGCTGGTCTTTCACGCACGATACGATCAGAAGTATTTACAAAGGTTGAAGGATTTTCAATGGAAGAAATCAA
TCATTTTTCTACTTCAAGTTTGATCACCCGTTCTTCAAATGATGTAACCCAGATTCAAATGGCAATGTCATTAGGTCTGC
AAGTGTTAATCAAAGCTCCTATTATGGCTATATGGGCCATTTCCAAAATAGTTGATAAATCTTGGGAATGGACACTTTCA
ACAGCGGGGGCAGTAGGTGTTTTGTTCCTTATTATAAGTGTTGTCGTTATATTCGCTTTACCAAAGTTTAAAGTGATCCA
AACCTTAACCGATAACCTTAACCGAGTTACACGTGAAAATCTAACCGGATTACGCGTTATTCGTGCATACAATGCAGAAA
ATTTTGAAGAAGAAAAATTTGAAACAGCAAATCACAAACTAATGAATACAAACTTATTTATCAATAGAATCATGGCGATT
ATGGGACCAGGGATGACATTGATCATGAGTGGATTAAGTTTATCTATTTACTGGATCGGTGCTTACTTAATCAATGATGT
TCAACTAACTAGTCAAGCAAGTGTTTTAGATCGTGTTGATATATTCAGTGATATGGTTGTGTTCTCTTCTTATGCTATTC
AAGTTGTTATTTCATTTATGATGTTAACGATTGTATTTATTATCGTTCCTCGTGCTGCAGTATCAGCTGGACGTATTTTA
GAAGTTTTAAATACAAAAGAAACCATTAAGGATGGAACATTGACACAATCTACTCAAGATCAAAAAGGTACCGTAGTATT
TGATAATGTATCTTTTCAGTATCCAGATGCTTCTGAAGCTATATTGGAAAATATTTCCTTTACGGCAAACAAAGGTGAAA
CAGTTGCTTTTATTGGTTCTACCGGTAGTGGGAAAAGTACGTTAGTCAATTTGATCCCTCGTTTCTTTGATGTAACAGGT
GGCCAAATTAAAGTTAACGGCCAGGATATCAAAGAATATACACAAAAATATCTGCATTCTTTAGTTGGGTTTGTTCCACA
AAAAGCGTTTTTATTCAGTGGTACGGTTCGTTCAAATGTGAGTTATGGAGATGCTGGACACGAAGTAACTGAAGCCGACA
TGAAAAAAGCTATTGAAATAGCTCAAAGTAGCGACTTTGTTGAGAAAATGGAAGATGGATATGATGCCTCAATTTCTCAA
TCAGGAAGCAACGTATCAGGAGGTCAGCGTCAACGTTTAGCAATCTCACGTGCGATTTCACGGAAGCCAGAGATTTTGGT
TTTTGATGACTCATTTTCAGCTTTAGATTACAAAACAGATCGTGTATTACGTGCAGCGTTAAACAAAGAATTAAAAGATA
CAACAAAATTAATTGTCGCTCAACGTATTGGTACCATTCGTGATGCAGACAAAATTATTGTTTTAGATGAAGGAAAAATT
GTTGGAATTGGTACACATCAAGAATTGATGCAAACGTGTGAAGTCTATCAAGACATCGCTTATTCTCAACTTTCTAAGGA
GGAATTAGCAGATGAGTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(17-272)

ABC transporter (ABC_tran)

(362-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1H1BL97

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

51.171

100

0.517