Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   LHA31_RS02890 Genome accession   NZ_CP084916
Coordinates   573417..575183 (-) Length   588 a.a.
NCBI ID   WP_197050323.1    Uniprot ID   -
Organism   Carnobacterium viridans strain AB01     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 568417..580183
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LHA31_RS02855 (LHA31_02855) - 568445..568918 (+) 474 WP_035022228.1 GNAT family N-acetyltransferase -
  LHA31_RS02860 (LHA31_02860) - 569000..569692 (-) 693 WP_035022226.1 5'-methylthioadenosine/adenosylhomocysteine nucleosidase -
  LHA31_RS02865 (LHA31_02865) macP 569713..569964 (-) 252 WP_035022223.1 cell wall synthase accessory phosphoprotein MacP -
  LHA31_RS02870 (LHA31_02870) - 569983..570534 (-) 552 WP_035022221.1 NUDIX hydrolase -
  LHA31_RS02875 (LHA31_02875) - 570815..571489 (+) 675 WP_411155658.1 5-bromo-4-chloroindolyl phosphate hydrolysis family protein -
  LHA31_RS02880 (LHA31_02880) - 571509..572729 (+) 1221 WP_035022216.1 toxic anion resistance protein -
  LHA31_RS02885 (LHA31_02885) - 572893..573141 (+) 249 WP_007724863.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  LHA31_RS02890 (LHA31_02890) rcrQ 573417..575183 (-) 1767 WP_197050323.1 ABC transporter ATP-binding protein Regulator
  LHA31_RS02895 (LHA31_02895) rcrP 575212..576990 (-) 1779 WP_035022212.1 ABC transporter ATP-binding protein Regulator
  LHA31_RS02900 (LHA31_02900) - 577022..577492 (-) 471 WP_226776683.1 MarR family winged helix-turn-helix transcriptional regulator -
  LHA31_RS02905 (LHA31_02905) cspD 577668..577868 (-) 201 WP_035022210.1 cold-shock protein CspD -
  LHA31_RS02910 (LHA31_02910) dapF 578028..579008 (-) 981 WP_035022208.1 diaminopimelate epimerase -

Sequence

Protein


Download         Length: 588 a.a.        Molecular weight: 65095.01 Da        Isoelectric Point: 5.1244

>NTDB_id=614029 LHA31_RS02890 WP_197050323.1 573417..575183(-) (rcrQ) [Carnobacterium viridans strain AB01]
MVGKKPDNFKESIGKLAKYCKPYMIYIIVAFVFAIFGTVFNLIGPDRLSEITDIITAGITGAINLEKIKSIGLFLVTLYV
LGAMLSYFQGFIMATVTQTVTKKLRTDISTKINRLPLRYFDSNNHGDILSRVTNDVDTIGQTLNQSLGQLVTSISLFIGS
LIMMFYTNVPMALSAILSTVIGFGLMITIIKKSQKYFSQQQKSLGELNGHVEEIYTGHNIVKAFNGEESAIEEFNEINDT
LFDSAWKSQYISGLMMPLMNFIGNFGYVVVCVVGAYLAFNDQITFGVIVAFMMYIRFFTQPLSQIAQAFTSLQSAAAASE
RVFNFLEEDELEVETGKPTSLGTVKGNVTFDHVKFGYNPDRPIIKDFSLEAKAGQKIAIVGPTGAGKTTLVNLLMRFYEV
NSGEIYIDGTPISSVTRGALHEQFCMVLQDTWLFEGTVRENIVYSKTGVKDEEVVNACKAVGVHHFIQTLPHGYDTILDD
TTSLSAGQKQLMTIARAMVADAPLLILDEATSSVDTRTELIIQKAMDSLMHGRTSFVIAHRLSTIKNADLIIVMKDGDVV
ESGNHDVLLQKNGFYADLYNSQFDQEEE

Nucleotide


Download         Length: 1767 bp        

>NTDB_id=614029 LHA31_RS02890 WP_197050323.1 573417..575183(-) (rcrQ) [Carnobacterium viridans strain AB01]
ATGGTAGGTAAGAAACCTGATAATTTTAAAGAGTCTATTGGTAAGTTAGCAAAATATTGTAAACCTTATATGATATACAT
TATAGTAGCATTTGTATTTGCTATTTTCGGTACAGTATTTAATTTAATAGGCCCGGATCGTCTTAGTGAAATTACAGATA
TAATTACTGCAGGCATTACTGGTGCTATAAATTTAGAAAAAATAAAAAGTATTGGTTTATTTTTAGTTACGTTATATGTT
CTTGGTGCAATGTTATCTTATTTCCAAGGATTTATTATGGCTACTGTAACTCAAACCGTTACTAAAAAATTGCGTACAGA
TATTTCAACAAAAATTAATCGTTTACCATTACGATACTTTGATAGCAACAATCATGGTGACATTTTGAGCCGTGTAACAA
ATGATGTGGATACAATTGGCCAAACATTAAACCAAAGTTTAGGCCAATTGGTAACCTCTATTAGTTTATTTATCGGTTCA
TTGATTATGATGTTTTATACAAATGTGCCTATGGCTTTATCTGCCATCCTATCAACCGTTATTGGTTTTGGCTTAATGAT
CACCATCATTAAAAAGTCACAAAAATATTTCAGTCAACAACAAAAAAGTTTAGGCGAATTAAATGGTCATGTCGAAGAAA
TATATACAGGTCATAATATTGTAAAAGCCTTTAATGGTGAAGAGTCAGCAATTGAAGAATTTAATGAAATCAATGATACA
TTATTTGATAGTGCATGGAAATCTCAATATATTTCTGGTCTAATGATGCCATTAATGAACTTTATTGGGAACTTTGGATA
TGTAGTGGTTTGTGTAGTTGGAGCTTATCTGGCATTCAATGATCAAATTACTTTTGGTGTGATTGTTGCCTTTATGATGT
ATATTCGTTTCTTTACACAACCTCTTTCACAAATTGCACAAGCTTTTACTAGTTTACAATCGGCAGCAGCTGCAAGTGAG
CGTGTCTTTAATTTCTTGGAAGAAGACGAGTTAGAAGTGGAAACTGGGAAACCTACTTCGTTAGGGACAGTTAAAGGAAA
TGTTACATTCGATCATGTGAAATTTGGATATAATCCTGACAGACCAATTATTAAGGACTTTTCTCTAGAAGCTAAAGCTG
GACAAAAAATTGCAATCGTAGGTCCAACTGGAGCAGGTAAGACGACATTAGTGAACTTGTTAATGCGTTTCTATGAAGTG
AATAGTGGAGAAATCTACATTGATGGAACACCAATTTCTAGTGTTACTAGAGGAGCCTTACACGAACAATTCTGTATGGT
ATTACAAGACACTTGGTTGTTTGAAGGAACGGTTAGAGAAAATATTGTCTACAGTAAAACAGGTGTAAAAGATGAAGAAG
TGGTCAACGCTTGTAAAGCAGTTGGAGTACATCATTTTATTCAAACTTTACCACACGGTTACGATACAATTTTAGATGAT
ACAACAAGTTTATCTGCTGGGCAAAAACAATTAATGACGATTGCTCGTGCAATGGTCGCAGATGCCCCATTATTGATTTT
GGACGAAGCAACAAGTTCTGTTGATACCCGTACTGAATTGATTATTCAAAAAGCAATGGATAGCTTAATGCATGGAAGAA
CGTCTTTCGTTATTGCACATCGTCTATCAACTATTAAGAATGCAGATTTGATTATTGTGATGAAAGATGGAGATGTAGTA
GAAAGTGGAAACCATGATGTTTTATTGCAAAAAAATGGATTTTATGCGGATCTTTACAATAGTCAATTTGATCAAGAAGA
AGAGTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(27-302)

ABC transporter (ABC_tran)

(365-512)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

59.38

98.81

0.587