Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   EL334_RS02970 Genome accession   NZ_AP019192
Coordinates   546085..546351 (+) Length   88 a.a.
NCBI ID   WP_001820593.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain ASP0581     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 541085..551351
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL334_RS02950 (ASP0581_05480) - 541340..541849 (+) 510 WP_000619939.1 GNAT family N-acetyltransferase -
  EL334_RS02955 (ASP0581_05490) pheT 541926..544331 (+) 2406 WP_033705499.1 phenylalanine--tRNA ligase subunit beta -
  EL334_RS02960 (ASP0581_05500) - 544399..545400 (-) 1002 WP_033705498.1 endonuclease/exonuclease/phosphatase family protein -
  EL334_RS02965 - 545556..546001 (+) 446 Protein_557 helix-turn-helix domain-containing protein -
  EL334_RS02970 (ASP0581_05530) HI0659 546085..546351 (+) 267 WP_001820593.1 helix-turn-helix domain-containing protein Machinery gene
  EL334_RS02975 (ASP0581_05540) metE 546612..548861 (+) 2250 WP_000108187.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  EL334_RS02980 (ASP0581_05550) metF 548925..549791 (+) 867 WP_000089989.1 methylenetetrahydrofolate reductase [NAD(P)H] -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 9670.12 Da        Isoelectric Point: 4.3934

>NTDB_id=61402 EL334_RS02970 WP_001820593.1 546085..546351(+) (HI0659) [Streptococcus pneumoniae strain ASP0581]
MEGCPSELFSKEEILESDMRVAIMSELIEARHEQGINQRKLEELSGVSQPVIARMETGESSLQLDTVLKVLTSLGKTLAV
VPLEQGKS

Nucleotide


Download         Length: 267 bp        

>NTDB_id=61402 EL334_RS02970 WP_001820593.1 546085..546351(+) (HI0659) [Streptococcus pneumoniae strain ASP0581]
TTGGAAGGATGTCCATCTGAGCTCTTTAGCAAGGAGGAAATCCTTGAAAGTGATATGCGAGTGGCTATTATGAGCGAGTT
GATTGAAGCTAGACATGAACAAGGAATCAATCAGAGAAAGCTAGAAGAACTCAGTGGAGTGAGTCAACCTGTCATAGCTA
GGATGGAAACAGGAGAGAGCAGTCTTCAGTTGGATACGGTCTTAAAAGTTCTAACCAGTCTAGGAAAGACACTAGCAGTC
GTTCCACTTGAACAGGGGAAAAGTTGA

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(28-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

55.844

87.5

0.489

Multiple sequence alignment