Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LHL15_RS14780 Genome accession   NZ_CP084900
Coordinates   3026590..3027219 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain EC20     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3021590..3032219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LHL15_RS14765 helD 3021832..3023886 (-) 2055 WP_053263464.1 DNA helicase IV -
  LHL15_RS14770 yccF 3024009..3024455 (+) 447 WP_001261235.1 YccF domain-containing protein -
  LHL15_RS14775 yccS 3024465..3026627 (+) 2163 WP_000875061.1 YccS family putative transporter -
  LHL15_RS14780 sxy/tfoX 3026590..3027219 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  LHL15_RS14785 sulA 3027438..3027947 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  LHL15_RS14790 ompA 3028304..3029344 (+) 1041 WP_000750416.1 porin OmpA -
  LHL15_RS14795 matP 3029420..3029872 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  LHL15_RS14800 ycbZ 3030058..3031818 (+) 1761 WP_000156518.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=614001 LHL15_RS14780 WP_000839153.1 3026590..3027219(-) (sxy/tfoX) [Escherichia coli strain EC20]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=614001 LHL15_RS14780 WP_000839153.1 3026590..3027219(-) (sxy/tfoX) [Escherichia coli strain EC20]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1