Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   N175_RS17695 Genome accession   NC_022224
Coordinates   871653..873704 (+) Length   683 a.a.
NCBI ID   WP_013868489.1    Uniprot ID   A0AAW8GRZ9
Organism   Vibrio anguillarum M3     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 866653..878704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N175_RS17685 (N175_18365) - 867330..868472 (+) 1143 WP_040122745.1 exonuclease SbcCD subunit D -
  N175_RS17690 (N175_18370) - 868472..871513 (+) 3042 WP_013868488.1 SbcC/MukB-like Walker B domain-containing protein -
  N175_RS17695 (N175_18375) cqsS 871653..873704 (+) 2052 WP_013868489.1 hybrid sensor histidine kinase/response regulator Regulator
  N175_RS17700 (N175_18380) cqsA 873791..874972 (-) 1182 WP_013868490.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  N175_RS17705 (N175_18385) - 875172..876146 (-) 975 WP_013868491.1 TDT family transporter -
  N175_RS17710 (N175_18390) clcA 876295..877692 (-) 1398 WP_013868492.1 H(+)/Cl(-) exchange transporter ClcA -

Sequence

Protein


Download         Length: 683 a.a.        Molecular weight: 78399.73 Da        Isoelectric Point: 5.4015

>NTDB_id=61392 N175_RS17695 WP_013868489.1 871653..873704(+) (cqsS) [Vibrio anguillarum M3]
MDVVKKIYQYAEPNLTLVGWMGFIGFPLYYYVWTYLFPQPYESMELRAICAILFAGIIFRNSTPKHLQHYLPYYYLFSIG
FCLPFFFGYMMLMNDWSTIWAMSFMASIFLHILLVHETKVMLIQAAIALACAYFVTYGVMDAELRVMVEWPYVPIFLFTY
IFGNLFYFRNQIEHEAKVSIAKSFGAGIAHEMRNPLSALKASIEVMGSVLPNPTASKSESYTLPSKDLELIAGLLRDADE
VIRSGNETIDLLLTSIDQNRVSTSTFKKHAVKPVIEEALRSFSYKRPEDRQAVTLKVVDDFDFLGSSTLLKYVLYNLLKN
AFYYQNNDMFNIHITLKSSENCHQITVKDNGVGIEPHLLDDIFKDFYTFGKNGSYGLGLPFCRKVMHAFGGDIICRSELG
EWTEFTLTFPEYDSQAVANIKLDLMKAKSLLYIGKTSIVNRYLSEKSFYLGFQLNVLEPESALRREEFEFEFDLIFVDLQ
TLDETPDYLTKLEPKLHFTQAKVCYLYDQNQRYALTMERHLTIYPIEKHKLLLDGSAIIDELLFETEELIADKNVIPLKQ
YDYEKRILLVDDNHSLRSFTALLLEKQGYEVLQASDGELALQMLANNSIDLVLMDIEMPIMDGISATLSIRSSTASYSKV
PIIGHTGDNSPSTIEKIRTSGMNDYVLKPADKTLLLKKLSHWI

Nucleotide


Download         Length: 2052 bp        

>NTDB_id=61392 N175_RS17695 WP_013868489.1 871653..873704(+) (cqsS) [Vibrio anguillarum M3]
ATGGACGTAGTAAAAAAAATATACCAGTACGCTGAGCCGAACCTCACCCTTGTGGGATGGATGGGGTTCATTGGTTTTCC
CCTTTATTATTACGTGTGGACTTATCTCTTTCCACAACCTTATGAAAGTATGGAGTTACGGGCGATTTGCGCCATTTTAT
TTGCGGGGATTATTTTTCGCAATTCAACGCCGAAACATTTACAGCACTACTTACCTTACTATTACTTGTTTTCAATAGGA
TTTTGTTTGCCATTCTTTTTTGGCTACATGATGCTGATGAACGATTGGTCAACGATCTGGGCGATGTCGTTCATGGCGTC
TATTTTCCTCCATATCCTCTTAGTCCACGAAACAAAAGTCATGCTGATTCAAGCCGCCATTGCATTAGCATGTGCTTACT
TTGTGACTTATGGCGTAATGGACGCGGAACTGCGAGTGATGGTGGAATGGCCGTACGTACCGATTTTTCTATTTACTTAC
ATTTTTGGCAACCTGTTCTATTTTCGTAACCAAATTGAACATGAAGCGAAGGTGTCGATTGCCAAGTCTTTTGGCGCAGG
GATTGCGCATGAAATGAGAAATCCATTAAGTGCGTTAAAAGCGTCAATTGAAGTAATGGGTTCAGTATTGCCCAATCCTA
CGGCATCCAAATCAGAATCTTATACGCTACCGTCTAAAGATTTAGAGCTGATTGCTGGGCTATTAAGAGATGCTGATGAA
GTCATTCGCTCCGGTAATGAGACCATTGATTTGCTGTTAACCTCGATTGATCAAAATAGGGTCTCAACATCGACCTTTAA
AAAGCATGCTGTAAAGCCTGTTATAGAAGAGGCACTGCGCAGTTTTTCTTATAAAAGACCAGAAGACAGGCAGGCAGTGA
CTCTTAAGGTGGTGGATGACTTTGATTTTTTAGGCAGCAGTACACTGTTAAAATACGTGCTCTACAATCTACTCAAGAAT
GCGTTCTACTATCAAAATAACGATATGTTTAATATCCATATCACCTTGAAATCAAGTGAGAATTGCCACCAAATTACAGT
GAAAGACAATGGTGTTGGTATTGAACCTCATTTGCTGGACGATATTTTTAAAGACTTTTATACCTTCGGTAAAAATGGCA
GCTATGGTCTGGGGTTACCCTTTTGCCGTAAAGTAATGCATGCTTTTGGAGGGGATATTATCTGCCGTTCTGAACTTGGA
GAGTGGACGGAGTTTACTTTAACGTTTCCCGAGTATGATTCGCAAGCCGTCGCTAATATTAAACTCGATCTAATGAAGGC
GAAATCTCTGCTTTATATTGGCAAAACGAGCATAGTGAATCGTTATCTCAGTGAGAAATCGTTCTATCTTGGTTTCCAGC
TTAATGTCTTAGAGCCTGAGAGTGCTTTGCGTCGAGAAGAGTTTGAATTTGAGTTTGATCTGATCTTTGTGGATCTGCAA
ACGTTGGATGAAACGCCGGATTACTTAACCAAACTGGAACCTAAACTGCATTTTACACAAGCAAAAGTTTGCTATTTATA
TGACCAAAATCAGCGTTACGCGTTGACGATGGAGCGTCATTTAACCATTTACCCAATTGAAAAGCACAAATTGTTATTGG
ATGGATCGGCGATTATTGATGAACTACTCTTTGAAACGGAAGAGCTTATTGCCGATAAAAATGTTATCCCATTAAAACAA
TATGATTATGAAAAACGAATTTTGTTGGTCGATGATAACCACTCCTTACGTAGCTTCACCGCTCTGTTGCTAGAAAAGCA
AGGGTATGAAGTACTGCAAGCGAGCGATGGGGAATTAGCATTACAAATGTTGGCCAATAATTCAATTGACTTGGTGTTAA
TGGATATTGAAATGCCGATTATGGATGGTATTTCGGCCACTTTATCTATCCGTTCATCCACCGCTTCTTACAGTAAAGTG
CCTATTATTGGGCACACGGGTGACAATAGCCCTTCAACGATAGAAAAAATCCGTACATCAGGAATGAATGATTACGTTTT
AAAACCAGCGGATAAAACGCTATTGTTAAAAAAATTAAGTCACTGGATTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(567-679)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(307-411)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

56.223

100

0.562

Multiple sequence alignment