Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   N175_RS14780 Genome accession   NC_022224
Coordinates   166440..167540 (-) Length   366 a.a.
NCBI ID   WP_013867911.1    Uniprot ID   -
Organism   Vibrio anguillarum M3     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 161440..172540
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N175_RS14765 (N175_15315) glpD 161507..163051 (+) 1545 WP_019280878.1 glycerol-3-phosphate dehydrogenase -
  N175_RS14770 (N175_15320) - 163195..163860 (+) 666 WP_019282225.1 PilZ domain-containing protein -
  N175_RS14775 (N175_15325) luxQ 163878..166424 (-) 2547 WP_013867910.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ Regulator
  N175_RS14780 (N175_15330) luxP 166440..167540 (-) 1101 WP_013867911.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  N175_RS14785 (N175_15335) - 167765..168916 (-) 1152 WP_020977854.1 conjugal transfer protein TraF -
  N175_RS14790 (N175_15340) - 169012..169335 (-) 324 WP_013867913.1 GIY-YIG nuclease family protein -
  N175_RS14795 (N175_15345) - 169336..169989 (-) 654 WP_013867914.1 YceH family protein -
  N175_RS14800 (N175_15350) - 170047..170250 (-) 204 WP_026028336.1 hypothetical protein -
  N175_RS14805 (N175_15355) - 170441..170758 (+) 318 WP_010319897.1 DUF496 family protein -
  N175_RS14810 (N175_15360) - 171066..171317 (+) 252 WP_013867916.1 YgjV family protein -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 41679.28 Da        Isoelectric Point: 6.0602

>NTDB_id=61390 N175_RS14780 WP_013867911.1 166440..167540(-) (luxP) [Vibrio anguillarum M3]
MRKILLLSFVFSVSLAASTQAAAQVLNGYWRYQEFLDLNPAQQALTDQMIQAVRQPPAVLSIEQDKPIHISVVYPGQQVS
DYWARNIKAFEMRLDELGIRYQINQVFTRPNVDIRQQSLSLMEAIRNKSDYLVFTLDTIRHRKFIEQLLSSNQTKIILQN
ITTPVKSWGDRQPFMYVGFDHEIGTMKLVDYYKKSAPKNSAYSVLYYSEGYVSDARGDSFIQEMSRDSKYHLASSFYTKA
TRDSAFDATLRILKQTPDINFIYACSTDVALGAMDALQQQNREDITLNGWGGGEAELDALQNSTLDVTIMRVNDDAGVAM
AEAIKWDLEGKPVPTVYSGDFELVTKEVSSAYIEKLKKRAFRYSDH

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=61390 N175_RS14780 WP_013867911.1 166440..167540(-) (luxP) [Vibrio anguillarum M3]
ATGAGAAAAATCCTGCTCCTTTCATTTGTGTTCAGTGTCAGTTTGGCAGCCTCCACTCAGGCTGCAGCGCAAGTTTTAAA
TGGCTATTGGCGATATCAAGAGTTTTTAGATCTTAATCCTGCGCAACAGGCTCTTACCGACCAGATGATACAGGCAGTGC
GTCAACCTCCCGCTGTACTCTCAATAGAGCAAGATAAACCTATTCATATTTCTGTTGTTTATCCAGGTCAACAAGTTTCC
GATTATTGGGCGCGCAATATCAAAGCCTTTGAGATGCGTTTAGACGAACTTGGGATTAGATACCAAATTAACCAAGTATT
CACTCGTCCGAATGTCGATATTCGCCAACAAAGTTTATCGTTGATGGAAGCGATCAGAAACAAATCCGATTACTTGGTGT
TTACGCTTGATACCATCCGTCACCGTAAATTTATCGAGCAGTTGTTAAGTTCAAATCAAACCAAAATCATTCTGCAAAAT
ATCACTACGCCAGTAAAAAGTTGGGGAGATCGCCAGCCTTTTATGTACGTGGGGTTTGATCATGAAATTGGCACAATGAA
ACTGGTGGATTACTACAAAAAGTCGGCGCCAAAGAATAGTGCTTATTCCGTACTCTATTATTCTGAAGGCTATGTCAGCG
ATGCACGCGGTGATAGTTTTATCCAAGAAATGAGTCGAGACAGCAAATATCACTTGGCCTCTTCGTTTTATACAAAAGCG
ACACGAGATAGTGCATTTGATGCAACTTTGCGTATTCTTAAACAAACACCAGATATTAATTTTATTTACGCATGCTCTAC
TGATGTTGCACTCGGTGCCATGGATGCGTTGCAGCAGCAAAATAGAGAAGATATTACGTTAAACGGCTGGGGCGGTGGTG
AGGCTGAATTGGACGCGCTGCAAAATAGCACACTTGATGTGACTATCATGCGTGTCAATGATGACGCCGGTGTTGCTATG
GCGGAAGCCATTAAGTGGGATCTTGAAGGAAAGCCGGTACCTACGGTTTACTCTGGTGATTTTGAATTGGTAACCAAAGA
GGTCTCTTCAGCGTATATTGAAAAGCTCAAAAAACGAGCATTTCGTTACTCTGACCATTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(70-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

63.889

98.361

0.628

Multiple sequence alignment