Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   NPS16_RS06620 Genome accession   NZ_CP101986
Coordinates   1438667..1440871 (-) Length   734 a.a.
NCBI ID   WP_258968838.1    Uniprot ID   -
Organism   Streptococcus mutans strain COCC33-14     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1433667..1445871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NPS16_RS06590 (NPS16_06590) - 1433820..1434515 (-) 696 WP_002267182.1 DnaD domain-containing protein -
  NPS16_RS06595 (NPS16_06595) metA 1434525..1435469 (-) 945 WP_002265202.1 homoserine O-succinyltransferase -
  NPS16_RS06600 (NPS16_06600) - 1435573..1436091 (-) 519 WP_002263078.1 adenine phosphoribosyltransferase -
  NPS16_RS06605 (NPS16_06605) - 1436223..1436591 (-) 369 Protein_1272 ClbS/DfsB family four-helix bundle protein -
  NPS16_RS06610 (NPS16_06610) - 1436764..1437396 (-) 633 WP_002276126.1 GyrI-like domain-containing protein -
  NPS16_RS06615 (NPS16_06615) - 1437648..1438547 (-) 900 WP_002266216.1 YafY family protein -
  NPS16_RS06620 (NPS16_06620) recJ 1438667..1440871 (-) 2205 WP_258968838.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  NPS16_RS06625 (NPS16_06625) - 1440868..1441632 (-) 765 WP_002263858.1 SDR family oxidoreductase -
  NPS16_RS06630 (NPS16_06630) rnz 1441629..1442558 (-) 930 WP_002269425.1 ribonuclease Z -
  NPS16_RS06635 (NPS16_06635) - 1442586..1443221 (-) 636 WP_002263071.1 cystathionine beta-lyase -
  NPS16_RS06640 (NPS16_06640) hflX 1443208..1444455 (-) 1248 WP_002285891.1 GTPase HflX -
  NPS16_RS06645 (NPS16_06645) miaA 1444644..1445528 (-) 885 WP_258968839.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -
  NPS16_RS06650 (NPS16_06650) - 1445603..1445779 (+) 177 WP_002263068.1 DUF3042 family protein -

Sequence

Protein


Download         Length: 734 a.a.        Molecular weight: 82359.13 Da        Isoelectric Point: 4.4559

>NTDB_id=613867 NPS16_RS06620 WP_258968838.1 1438667..1440871(-) (recJ) [Streptococcus mutans strain COCC33-14]
MITSKYAWKINEKKPDDGFFELAKKENLNPTAAQILYERGFKTSEDIEAFLRPDLSQLHDPFLLNDMDKAVTRIRRAIET
NERILIYGDYDADGMTSSSIAKEALEMLGAEVEAYLPNRFTDGYGPNLSVYKYFIEQQDISLILTVDNGIAGHDAIAYAQ
GQGVDVIVTDHHSMPAELPSAYAVVHPEHPDANYPFKCLAGCGVAFKLACALLESIPTEMLDLVAIGTIADMVSLTDENR
VMVKYGLEILKQTERVGLQELIALAGVDFADINEETIGFKLAPQLNALGRLDDPNPAVELLTGFDDEEAKTIAAMINEKN
EERKTIVQAIFEEAMTLVDENKSVQVLAKEGWHAGVLGIVAGRIMEQINQPVIVLNIENGIAKGSARSLESVNIFNALDA
HRDLFMAFGGHAGAAGMTLEADKLEELSQALNDYIQEHAIDLSQKSALVIDEELYLPELSLDTLKGLETLAPFGMDNKKP
IFLLRDFTVKQVRTMGQNGAHLKLKVAQEQAVFDLLAFNYGSLVTEFQQAQHLELAVTLSVNRWNGNTSLQLMLVDARVE
GIQLLDIRARNSALPDGVPFLEDQTDSKAVVLFEIPEKEEDLLALFENRDFEVIYFKNMIKHQYYLTGSGTREQFAKLYK
TIYQFPEFDVRHKLKELSQFLKIPDILLVKMIQIFDELDFVSIDDGIMTVNKDAQKREISDSHIYQDLKKLVKFQELMAL
GTPQEIYEFLKRDR

Nucleotide


Download         Length: 2205 bp        

>NTDB_id=613867 NPS16_RS06620 WP_258968838.1 1438667..1440871(-) (recJ) [Streptococcus mutans strain COCC33-14]
ATGATTACTTCCAAATATGCTTGGAAAATAAATGAAAAAAAGCCAGATGATGGCTTTTTTGAGCTGGCTAAAAAAGAAAA
TCTCAATCCTACAGCTGCACAAATTTTATATGAGCGAGGTTTTAAAACAAGTGAAGATATAGAAGCGTTTTTGAGACCTG
ATTTGTCTCAATTACATGATCCTTTTCTTTTAAATGATATGGACAAGGCTGTCACGCGTATTCGCAGAGCTATTGAAACC
AATGAACGAATTCTTATCTATGGGGATTACGATGCTGATGGTATGACGTCAAGTTCCATTGCAAAGGAAGCTTTGGAAAT
GCTGGGAGCTGAGGTAGAGGCTTATCTTCCTAATCGTTTTACCGATGGTTATGGTCCCAATCTCAGTGTTTATAAATATT
TTATTGAGCAGCAGGATATATCACTGATTCTTACTGTGGATAATGGTATTGCTGGCCATGATGCTATTGCTTATGCGCAA
GGACAAGGTGTTGATGTCATTGTTACTGACCACCACAGTATGCCTGCTGAGCTTCCTTCAGCTTATGCTGTCGTTCATCC
TGAACATCCAGATGCTAATTATCCTTTTAAATGTTTAGCAGGGTGCGGTGTCGCTTTTAAGCTAGCCTGTGCCTTGTTAG
AATCCATTCCGACAGAAATGCTGGATTTGGTGGCTATTGGAACCATTGCCGATATGGTATCGCTCACCGATGAAAATCGT
GTAATGGTCAAATACGGTCTTGAAATCCTAAAACAAACAGAACGCGTCGGTCTGCAAGAATTAATAGCACTTGCAGGTGT
TGATTTTGCTGATATCAATGAAGAAACCATTGGTTTCAAGTTAGCACCCCAGCTTAATGCTTTGGGACGTCTGGATGATC
CCAATCCTGCTGTTGAATTGTTGACAGGCTTTGATGATGAAGAAGCAAAGACTATTGCGGCCATGATTAATGAAAAAAAT
GAGGAGCGAAAGACCATTGTACAGGCTATTTTTGAAGAAGCTATGACTCTGGTTGATGAGAACAAATCTGTTCAGGTCTT
GGCTAAAGAAGGCTGGCATGCTGGTGTTCTGGGGATTGTTGCAGGTCGTATTATGGAACAAATAAACCAGCCAGTCATTG
TTCTTAATATTGAAAATGGCATTGCCAAGGGAAGTGCCCGTAGTTTAGAGTCAGTCAATATTTTTAATGCCCTTGATGCG
CATAGGGATTTATTTATGGCCTTTGGAGGCCATGCTGGAGCTGCAGGTATGACTCTAGAGGCTGATAAATTAGAAGAATT
ATCACAGGCTTTAAATGATTATATTCAAGAACATGCGATTGATTTATCGCAAAAGTCTGCTTTAGTAATTGATGAAGAAT
TGTACTTGCCAGAACTTAGTTTAGATACTTTAAAAGGGCTTGAAACTTTGGCTCCTTTTGGTATGGACAATAAAAAACCT
ATTTTTTTACTAAGGGATTTTACAGTCAAACAGGTTAGAACGATGGGACAAAATGGAGCTCATCTGAAGTTAAAAGTGGC
TCAGGAACAGGCTGTCTTTGATCTCCTTGCCTTTAATTACGGTTCGCTCGTGACAGAATTTCAACAAGCTCAGCATCTCG
AACTAGCTGTTACTTTATCGGTTAATCGTTGGAACGGCAATACTAGTCTACAATTGATGCTAGTTGATGCGCGTGTTGAA
GGCATTCAGTTGCTTGATATCCGTGCTCGCAATAGCGCTCTGCCTGACGGAGTTCCCTTTTTAGAAGATCAAACAGATAG
TAAGGCAGTTGTCTTATTTGAAATACCGGAAAAAGAAGAAGACCTTCTAGCACTTTTTGAAAATCGGGATTTTGAAGTCA
TTTATTTTAAAAATATGATTAAGCATCAATATTATTTAACAGGATCTGGAACGCGTGAGCAATTTGCTAAGCTTTACAAG
ACGATTTACCAGTTTCCGGAATTTGATGTACGTCATAAGTTAAAAGAGCTCAGTCAATTTCTCAAAATTCCAGATATTTT
GCTGGTCAAGATGATCCAAATTTTTGATGAATTGGACTTTGTTTCCATTGATGATGGCATTATGACAGTTAATAAAGATG
CTCAAAAACGGGAAATTTCTGACAGTCATATTTATCAAGATTTGAAAAAATTAGTGAAATTCCAAGAGTTAATGGCATTA
GGAACACCTCAGGAAATATATGAATTTTTAAAACGCGATCGCTAA

Domains

Predicted by InterProScan.

DHH family (DHH)

(83-228)

DHHA1 domain (DHHA1)

(317-435)

RecJ OB domain (RecJ_OB)

(450-556)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(584-729)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

64.946

100

0.651
  recJ Bacillus subtilis subsp. subtilis str. 168

37.726

100

0.398