Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   NPS16_RS04640 Genome accession   NZ_CP101986
Coordinates   1030497..1031459 (+) Length   320 a.a.
NCBI ID   WP_168749588.1    Uniprot ID   -
Organism   Streptococcus mutans strain COCC33-14     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1025497..1036459
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NPS16_RS04625 (NPS16_04625) - 1026503..1027606 (+) 1104 WP_002265845.1 ABC transporter permease -
  NPS16_RS04630 (NPS16_04630) ylqF 1028704..1029555 (+) 852 WP_002275897.1 ribosome biogenesis GTPase YlqF -
  NPS16_RS04635 (NPS16_04635) - 1029542..1030324 (+) 783 WP_168749587.1 ribonuclease HII -
  NPS16_RS04640 (NPS16_04640) ceuB 1030497..1031459 (+) 963 WP_168749588.1 ABC transporter permease Machinery gene
  NPS16_RS04645 (NPS16_04645) - 1031456..1032427 (+) 972 WP_002275899.1 iron chelate uptake ABC transporter family permease subunit -
  NPS16_RS04650 (NPS16_04650) - 1032424..1033230 (+) 807 WP_002270389.1 ABC transporter ATP-binding protein -
  NPS16_RS04655 (NPS16_04655) - 1033278..1034294 (+) 1017 WP_179957224.1 siderophore ABC transporter substrate-binding protein -
  NPS16_RS04660 (NPS16_04660) - 1034366..1034647 (+) 282 WP_002262863.1 hypothetical protein -
  NPS16_RS04665 (NPS16_04665) dprA 1034814..1035656 (+) 843 WP_002262865.1 DNA-processing protein DprA Machinery gene

Sequence

Protein


Download         Length: 320 a.a.        Molecular weight: 34959.25 Da        Isoelectric Point: 9.8764

>NTDB_id=613850 NPS16_RS04640 WP_168749588.1 1030497..1031459(+) (ceuB) [Streptococcus mutans strain COCC33-14]
MKKVLTVPVLGAAAVFLSLVSIFIGVKSLSLFELGSLDDSQLNILLSSRIPRTVSILIAGSSLAVCGLIMQQLTQNKFVS
PTTAGTMDWAKLGVVVTIILFSKSSLLLQLIISSVFVIFGSLFFIYLLKVIKFKDDIFIPLVGLMLGKVVSAISTFLGVQ
FQILQSVNSWLEGHLSIMTSHRYEILFLVLPCMVLIYLYAHQFTIAGLGEDFSKNLGLNYQFIINLGLVIVSVMTAIIVT
VVGSLPFLGLIVPNSISAIKGDNMKNNLILTSFLGAVIVLICDIFGRLVIFPYEVSIGLTMGIIGSIFFLYFLMKGRRRS

Nucleotide


Download         Length: 963 bp        

>NTDB_id=613850 NPS16_RS04640 WP_168749588.1 1030497..1031459(+) (ceuB) [Streptococcus mutans strain COCC33-14]
ATGAAAAAAGTACTCACTGTTCCAGTGCTGGGTGCAGCTGCAGTCTTTCTTTCTCTCGTTTCAATATTTATCGGTGTTAA
GAGTCTATCGCTTTTTGAACTGGGCTCTTTAGACGATTCACAACTTAACATTTTATTATCTAGTCGCATTCCTAGAACGG
TTAGTATTTTAATTGCTGGCTCTAGTTTAGCCGTTTGTGGTTTAATTATGCAGCAATTAACGCAAAATAAATTTGTCTCA
CCGACAACGGCTGGGACAATGGATTGGGCAAAGCTAGGTGTTGTTGTCACTATTATCTTATTTAGTAAATCTTCTTTACT
ATTGCAGTTGATTATTTCATCGGTCTTTGTCATTTTTGGTTCTTTGTTTTTTATCTATCTTTTAAAGGTTATTAAATTTA
AGGATGATATTTTCATTCCTCTAGTAGGTCTGATGTTGGGGAAAGTTGTATCTGCAATCAGTACTTTTTTAGGAGTACAG
TTTCAGATATTGCAGTCTGTCAACAGTTGGTTAGAAGGTCATCTTTCCATCATGACTTCTCATCGATATGAGATTTTATT
TTTGGTGCTGCCTTGCATGGTATTAATTTACCTTTATGCTCATCAGTTTACTATAGCTGGCTTGGGAGAAGATTTTTCTA
AAAATCTAGGTTTGAATTATCAATTTATTATTAATTTAGGCTTGGTTATTGTTTCGGTTATGACAGCTATCATTGTAACA
GTTGTTGGCAGTCTTCCTTTTTTAGGTTTGATTGTTCCTAATTCGATTTCTGCTATCAAGGGCGATAATATGAAGAACAA
CTTAATATTAACCTCTTTTTTAGGTGCTGTTATTGTGCTTATTTGTGATATTTTTGGACGTCTTGTTATTTTTCCTTATG
AAGTTTCTATTGGATTGACTATGGGAATAATAGGAAGTATCTTTTTTCTTTATTTTTTGATGAAGGGAAGAAGGCGTTCA
TGA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(15-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

46.708

99.688

0.466