Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   LB315_RS10575 Genome accession   NZ_CP084892
Coordinates   2112909..2113625 (+) Length   238 a.a.
NCBI ID   WP_000688492.1    Uniprot ID   A0A7U7IEW1
Organism   Staphylococcus aureus strain CC1956/ST4614-MSSA     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2107909..2118625
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LB315_RS10545 (LB315_10555) - 2108110..2108736 (+) 627 WP_229373837.1 nitroreductase family protein -
  LB315_RS10550 (LB315_10560) - 2109114..2109899 (+) 786 WP_197805571.1 carbon-nitrogen family hydrolase -
  LB315_RS14460 (LB315_10565) - 2110498..2110632 (-) 135 WP_001549197.1 delta-lysin family phenol-soluble modulin -
  LB315_RS10560 (LB315_10570) - 2110868..2111431 (+) 564 WP_001105715.1 accessory gene regulator AgrB -
  LB315_RS10565 (LB315_10575) - 2111433..2111573 (+) 141 WP_001094303.1 cyclic lactone autoinducer peptide -
  LB315_RS10570 (LB315_10580) - 2111598..2112890 (+) 1293 WP_001807128.1 GHKL domain-containing protein -
  LB315_RS10575 (LB315_10585) agrA 2112909..2113625 (+) 717 WP_000688492.1 LytTR family DNA-binding domain-containing protein Regulator
  LB315_RS10580 (LB315_10590) - 2113697..2113804 (+) 108 WP_041204320.1 hypothetical protein -
  LB315_RS10585 (LB315_10595) - 2113992..2114951 (-) 960 WP_001253306.1 carbohydrate kinase -
  LB315_RS10590 (LB315_10600) - 2114948..2116432 (-) 1485 WP_000141421.1 glycoside hydrolase family 32 protein -
  LB315_RS10595 (LB315_10605) - 2116582..2117532 (-) 951 WP_000790321.1 LacI family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27905.90 Da        Isoelectric Point: 6.0927

>NTDB_id=613835 LB315_RS10575 WP_000688492.1 2112909..2113625(+) (agrA) [Staphylococcus aureus strain CC1956/ST4614-MSSA]
MKIFICEDDPKQRENMVTIIKNYIMIEEKPMEIALATDNPYEVLEQAKNMNDIGCYFLDIQLSTDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPAELRTRIIDCLETAHTRLQLLSKDNSVETIELKRGSNSVYVQYDDIM
FFESSTKSHRLIAHLDNRQIEFYGNLKELSQLDDRFFRCHNSFVVNRHNIESIDSKERIVYFKNKEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=613835 LB315_RS10575 WP_000688492.1 2112909..2113625(+) (agrA) [Staphylococcus aureus strain CC1956/ST4614-MSSA]
ATGAAAATTTTCATTTGCGAAGACGATCCAAAACAAAGAGAAAACATGGTTACCATTATTAAAAATTATATAATGATAGA
AGAAAAGCCTATGGAAATTGCCCTCGCAACTGATAATCCTTATGAGGTGCTTGAGCAAGCTAAAAATATGAATGACATAG
GCTGTTACTTTTTAGATATTCAACTTTCAACTGATATTAATGGTATCAAATTAGGCAGTGAAATTCGTAAGCATGATCCA
GTTGGTAACATTATATTTGTTACGAGTCACAGTGAACTTACCTATTTAACGTTTGTCTACAAAGTTGCAGCGATGGATTT
TATTTTTAAAGATGATCCAGCTGAATTAAGAACTCGAATTATAGACTGTTTAGAAACTGCACATACACGCTTACAATTGT
TGTCTAAAGATAATAGCGTTGAAACGATTGAATTAAAACGTGGCAGTAATTCAGTGTATGTTCAATATGATGATATTATG
TTTTTTGAATCATCAACAAAATCTCACAGACTCATTGCCCATTTAGATAACCGTCAAATTGAATTTTATGGTAATTTAAA
AGAACTGAGTCAATTAGATGATCGTTTCTTTAGATGTCATAATAGCTTTGTCGTCAATCGCCATAACATTGAATCTATAG
ATTCGAAAGAGCGAATTGTCTATTTTAAAAATAAAGAACACTGCTATGCATCGGTGAGAAACGTTAAAAAAATATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7IEW1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

100

100

1