Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   NPS17_RS01335 Genome accession   NZ_CP101985
Coordinates   289129..291105 (+) Length   658 a.a.
NCBI ID   WP_002271627.1    Uniprot ID   -
Organism   Streptococcus mutans strain COCC33-14R     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 284129..296105
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NPS17_RS01320 (NPS17_01320) comB/nlmE 284139..285041 (+) 903 WP_002266018.1 HlyD family efflux transporter periplasmic adaptor subunit Regulator
  NPS17_RS01325 (NPS17_01325) - 285417..287084 (+) 1668 WP_002271628.1 transcription antiterminator -
  NPS17_RS01330 (NPS17_01330) ulaG 287664..288755 (+) 1092 WP_002263526.1 L-ascorbate 6-phosphate lactonase -
  NPS17_RS01335 (NPS17_01335) recP/tkt 289129..291105 (+) 1977 WP_002271627.1 transketolase Machinery gene
  NPS17_RS01340 (NPS17_01340) - 291670..292638 (+) 969 WP_032533267.1 AraC family transcriptional regulator -
  NPS17_RS01345 (NPS17_01345) - 292881..293393 (+) 513 WP_002266701.1 HXXEE domain-containing protein -
  NPS17_RS01350 (NPS17_01350) - 293468..293920 (+) 453 WP_002266702.1 LytTR family DNA-binding domain-containing protein -
  NPS17_RS01355 (NPS17_01355) - 293920..294303 (+) 384 WP_002263531.1 hypothetical protein -
  NPS17_RS01360 (NPS17_01360) - 294321..295277 (+) 957 WP_002266703.1 ketopantoate reductase family protein -
  NPS17_RS01365 (NPS17_01365) - 295323..296063 (-) 741 WP_002266024.1 LysR family transcriptional regulator -

Sequence

Protein


Download         Length: 658 a.a.        Molecular weight: 71059.56 Da        Isoelectric Point: 4.7094

>NTDB_id=613697 NPS17_RS01335 WP_002271627.1 289129..291105(+) (recP/tkt) [Streptococcus mutans strain COCC33-14R]
MSDLSVNAIRFLGVDAIEKSKSGHPGVVMGAAPMAYSLYTKHLRVNPSQPNWINRDRFVLSAGHGSMLLYALLHLSGFED
ISIDEIKNFRQWGSKTPGHPEYGHTVGVDVTTGPLGQGISMAVGLAQAERFLAAKYNREGYPIFDHYTYVIAGDGDFMEG
VSGEASSYAAKQNLDKLIVLYDSNDICLDGETNDAFTESVRARYDAYGWHTILVEDGNNIEAIGLAIEEAKAAGKPSLIE
IKTVIGYGAPTKGGTNAVHGAPLGAEEAAATRKALNWGYAPFEVPQEVYDDFKENVADRGEAAYDAWSNLVGEYRQAYPK
EAREVDAIIDGKDPVEIKEADFPVYENGFSQATRNSSQDAINAAADVLPNFLGGSADLAHSNMTYIKADGLQDADHPLNR
NIQFGVREFAMAAVLNGMALHGGLRVYGGTFFVFSDYLKAAVRLSALQGVPVTYVFTHDSIAVGEDGPTHEPIEHLAGLR
ATPNLVVFRPADARETQAAWHYALTSQNTPTALVLTRQNLDVEAGSSFTSVAKGAYVTYETDSDFNTILLASGSEVNLAV
KAAKELEAQGEKVRVVSVPSTELFDEQSAAYKEAILPNSVRRRVAIEMAASQPWYKYVGLDGAVIGIDKFGASAPAAQVI
ENYGFTVDNVVKVVKELK

Nucleotide


Download         Length: 1977 bp        

>NTDB_id=613697 NPS17_RS01335 WP_002271627.1 289129..291105(+) (recP/tkt) [Streptococcus mutans strain COCC33-14R]
ATGTCAGATTTATCGGTTAATGCCATTCGCTTTTTAGGGGTAGATGCTATTGAAAAGTCTAAGTCAGGTCACCCGGGTGT
TGTCATGGGCGCTGCCCCAATGGCTTACAGTCTATATACTAAGCATTTACGTGTTAACCCAAGTCAGCCAAATTGGATTA
ACCGTGACCGTTTTGTTTTGTCAGCTGGTCATGGCTCAATGCTTTTATATGCTCTCTTGCACTTGTCGGGATTTGAAGAT
ATTTCTATTGATGAAATCAAAAATTTCCGTCAGTGGGGCTCTAAAACACCGGGGCACCCTGAGTATGGCCATACCGTAGG
TGTTGATGTGACAACAGGCCCTCTTGGCCAAGGGATTTCAATGGCTGTTGGTTTGGCTCAAGCTGAACGTTTCTTAGCTG
CTAAATACAATCGTGAAGGCTACCCTATTTTTGACCACTATACTTATGTTATTGCCGGTGATGGTGATTTTATGGAAGGT
GTTTCTGGCGAAGCGTCATCCTATGCTGCCAAACAAAATTTGGATAAACTGATTGTTCTTTATGATTCTAATGATATTTG
TTTGGATGGTGAAACCAATGATGCGTTCACTGAAAGTGTTCGTGCACGATATGATGCTTATGGATGGCATACAATCTTAG
TTGAAGATGGCAATAATATTGAAGCTATTGGACTTGCTATTGAAGAAGCAAAGGCAGCTGGCAAACCTTCTCTTATTGAA
ATTAAAACTGTGATTGGCTACGGTGCTCCAACTAAAGGCGGTACCAATGCTGTTCATGGTGCACCACTTGGAGCTGAAGA
AGCAGCTGCTACTCGTAAGGCTCTCAATTGGGGTTATGCTCCTTTTGAAGTTCCTCAAGAGGTTTATGATGATTTCAAAG
AAAATGTTGCGGATCGTGGTGAAGCTGCTTACGATGCTTGGTCAAATCTTGTTGGAGAATATCGACAAGCTTATCCTAAA
GAGGCGCGTGAAGTGGATGCAATTATTGATGGAAAAGATCCTGTGGAAATCAAAGAAGCTGATTTTCCAGTCTACGAAAA
TGGTTTCTCTCAAGCAACGCGTAATTCTAGTCAAGATGCCATCAATGCTGCGGCAGACGTACTACCTAACTTTCTTGGAG
GATCTGCTGATCTTGCGCATTCTAACATGACTTACATTAAAGCAGATGGGCTTCAAGATGCTGATCATCCGCTTAACCGT
AACATCCAGTTTGGTGTTCGTGAATTTGCTATGGCTGCTGTTTTGAATGGTATGGCTCTTCATGGCGGACTGCGTGTTTA
TGGCGGTACCTTCTTTGTCTTTTCAGACTATCTCAAAGCAGCTGTTCGTTTGTCAGCTCTTCAAGGAGTACCAGTAACTT
ATGTCTTTACCCACGATTCGATTGCCGTTGGTGAAGATGGCCCTACTCATGAACCGATTGAACACTTGGCAGGTTTACGT
GCCACTCCTAATTTGGTTGTTTTTCGCCCAGCTGATGCACGCGAAACACAGGCAGCATGGCATTATGCTTTGACAAGCCA
AAACACACCAACAGCTCTTGTTTTGACACGTCAAAATCTTGATGTTGAAGCTGGTTCAAGCTTTACTTCAGTTGCTAAGG
GAGCTTATGTTACTTATGAAACAGATTCCGACTTTAATACCATTCTTTTGGCATCAGGTTCTGAAGTTAACTTAGCAGTC
AAAGCAGCTAAGGAATTGGAAGCACAAGGCGAAAAAGTACGTGTTGTTTCTGTTCCTTCTACAGAGCTCTTTGATGAGCA
ATCTGCTGCCTACAAAGAAGCTATTTTGCCAAATTCAGTACGCCGTCGTGTAGCCATTGAAATGGCAGCCAGCCAACCAT
GGTATAAATATGTTGGTCTTGATGGTGCGGTTATCGGTATTGATAAATTTGGAGCATCAGCTCCTGCTGCTCAAGTCATT
GAAAATTATGGCTTTACAGTAGATAATGTGGTTAAAGTTGTTAAGGAACTGAAATAG

Domains

Predicted by InterProScan.

Transketolase, pyrimidine binding domain (Transket_pyr)

(352-521)

Transketolase, C-terminal domain (Transketolase_C)

(546-650)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(4-334)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

78.995

99.848

0.789