Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   NPS17_RS00205 Genome accession   NZ_CP101985
Coordinates   28539..29294 (+) Length   251 a.a.
NCBI ID   WP_002271563.1    Uniprot ID   -
Organism   Streptococcus mutans strain COCC33-14R     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 23539..34294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NPS17_RS00185 (NPS17_00185) mreD 24281..24787 (+) 507 WP_002263141.1 rod shape-determining protein MreD -
  NPS17_RS00190 (NPS17_00190) - 24897..26192 (+) 1296 WP_258969017.1 CHAP domain-containing protein -
  NPS17_RS00195 (NPS17_00195) - 26317..27285 (+) 969 WP_002263139.1 ribose-phosphate diphosphokinase -
  NPS17_RS00200 (NPS17_00200) - 27374..28549 (+) 1176 WP_002264118.1 pyridoxal phosphate-dependent aminotransferase -
  NPS17_RS00205 (NPS17_00205) recO 28539..29294 (+) 756 WP_002271563.1 DNA repair protein RecO Machinery gene
  NPS17_RS00210 (NPS17_00210) plsX 29502..30500 (+) 999 WP_002264116.1 phosphate acyltransferase PlsX -
  NPS17_RS00215 (NPS17_00215) - 30502..30750 (+) 249 WP_002263135.1 acyl carrier protein -
  NPS17_RS00220 (NPS17_00220) comA 30977..31558 (+) 582 WP_002264115.1 ATP-binding cassette domain-containing protein Regulator
  NPS17_RS00225 (NPS17_00225) purC 31680..32387 (+) 708 WP_002271562.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 251 a.a.        Molecular weight: 29371.81 Da        Isoelectric Point: 6.3364

>NTDB_id=613687 NPS17_RS00205 WP_002271563.1 28539..29294(+) (recO) [Streptococcus mutans strain COCC33-14R]
MQTKETRGLVLYNRQFREDDNLVKIFTETSGKHMFFVRHATNSKLSSVIQPLILADFILKINNHGLSYIEDYKGVSLFKE
INADIYKLAYATYLVSLADAAISDAVYDAPLFAFLIKTLELMDEGLDYEILTNIFEIQILDRFGVQLNFHDCVFCHRVGL
AFDFSHRYSGLLCPEHYEKDLYRSHLDPNVPYLLNQFQTLHFDSLKTISVKPDMKQKLRKFIDEVYEDYIGLRLKSKKFI
DDLDHWGQVMK

Nucleotide


Download         Length: 756 bp        

>NTDB_id=613687 NPS17_RS00205 WP_002271563.1 28539..29294(+) (recO) [Streptococcus mutans strain COCC33-14R]
ATGCAGACTAAAGAAACAAGAGGTTTAGTGCTTTATAATCGGCAATTTAGAGAAGATGATAATCTGGTTAAAATTTTTAC
GGAAACTTCCGGCAAACACATGTTTTTTGTGCGTCATGCTACTAATTCAAAATTGTCTTCTGTCATTCAACCATTGATTC
TAGCTGATTTTATTTTAAAAATTAATAATCATGGACTTTCTTATATTGAAGATTATAAGGGAGTCTCTCTTTTTAAGGAA
ATTAATGCAGATATTTATAAATTAGCTTATGCTACTTACCTTGTGTCTTTGGCTGATGCTGCTATTTCAGATGCTGTCTA
TGATGCCCCTCTTTTTGCTTTTTTAATTAAGACCCTAGAATTGATGGATGAAGGTCTTGATTATGAAATTTTGACCAATA
TTTTTGAAATTCAAATTCTAGATCGCTTTGGCGTTCAACTTAATTTTCATGACTGTGTTTTTTGCCATCGTGTCGGTTTA
GCTTTTGATTTTTCACATCGCTATTCAGGTCTTTTGTGTCCTGAACATTATGAAAAAGATCTTTATCGTAGTCACTTAGA
TCCTAATGTCCCTTACCTTTTGAACCAATTTCAAACTTTACATTTTGATAGCTTAAAGACCATTTCAGTTAAACCTGACA
TGAAACAAAAGCTGAGAAAATTTATTGATGAAGTTTATGAGGACTATATTGGTCTTCGTCTCAAAAGTAAAAAATTTATT
GATGATTTAGATCACTGGGGACAAGTTATGAAATAA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(84-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

64.94

100

0.649