Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LGL98_RS16355 Genome accession   NZ_CP084874
Coordinates   3356740..3357336 (-) Length   198 a.a.
NCBI ID   WP_136032085.1    Uniprot ID   A0A7U3F210
Organism   Klebsiella africana strain 200023     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3351740..3362336
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LGL98_RS16340 (LGL98_16340) helD 3351948..3354002 (-) 2055 WP_136032089.1 DNA helicase IV -
  LGL98_RS16345 (LGL98_16345) - 3354127..3354573 (+) 447 WP_004224032.1 YccF domain-containing protein -
  LGL98_RS16350 (LGL98_16350) yccS 3354591..3356726 (+) 2136 WP_136032087.1 YccS family putative transporter -
  LGL98_RS16355 (LGL98_16355) sxy/tfoX 3356740..3357336 (-) 597 WP_136032085.1 TfoX/Sxy family DNA transformation protein Regulator
  LGL98_RS16360 (LGL98_16360) sulA 3357693..3358202 (+) 510 WP_136032083.1 SOS-induced cell division inhibitor SulA -
  LGL98_RS16365 (LGL98_16365) ompA 3358555..3359607 (+) 1053 WP_136032081.1 porin OmpA -
  LGL98_RS16370 (LGL98_16370) matP 3359716..3360168 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  LGL98_RS16375 (LGL98_16375) - 3360354..3362111 (+) 1758 WP_136032080.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22756.39 Da        Isoelectric Point: 9.6852

>NTDB_id=613685 LGL98_RS16355 WP_136032085.1 3356740..3357336(-) (sxy/tfoX) [Klebsiella africana strain 200023]
MRKLVCPRLPQFQACVSALGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHHNPLLMLRRHGRIVPLK
YYQIDDALWRDEKQLFRLSLLSWQSAQREKYHRRDSGRLKDLPNISFHMELQLIHAGIPDVRTLREIGAQQAWLKLRENN
ASLSPSVLLGLEAAIVGIHVAALPTPRRQELMEWAENR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=613685 LGL98_RS16355 WP_136032085.1 3356740..3357336(-) (sxy/tfoX) [Klebsiella africana strain 200023]
ATGAGAAAACTCGTATGTCCGCGGCTTCCGCAATTTCAGGCCTGCGTCTCAGCGCTGGGTCAATTACATACCCGCCCGCT
CTTTGGCGGATACAGTCTGGCCATTGATGATACGGTGTTTGCGATGGTGGCAGAGGGAAATATCTATCTGAAGGCCTGCG
AGCAGAGCGCCGCCTACCGGGTTGAACACCATAATCCTTTATTGATGTTGCGTCGGCATGGGCGCATTGTGCCGCTGAAA
TATTATCAGATTGACGACGCCTTATGGCGAGATGAGAAACAGCTCTTTCGCCTGTCGCTGTTGTCGTGGCAGAGTGCCCA
GCGCGAAAAGTATCACCGCCGGGATTCTGGCCGTTTGAAGGATTTACCCAACATCAGCTTTCATATGGAATTGCAGCTGA
TTCATGCGGGCATACCGGATGTCAGGACGCTTCGGGAGATTGGCGCCCAGCAAGCCTGGCTGAAGCTACGCGAAAACAAT
GCTTCTTTGTCACCCAGCGTACTGCTGGGGTTGGAAGCCGCGATTGTCGGGATCCATGTCGCCGCGCTCCCGACGCCGCG
GCGTCAGGAGCTGATGGAATGGGCGGAGAATCGCTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U3F210

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

50.254

99.495

0.5