Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   NPS18_RS02830 Genome accession   NZ_CP101984
Coordinates   544898..546556 (+) Length   552 a.a.
NCBI ID   WP_002262103.1    Uniprot ID   Q8DVB0
Organism   Streptococcus mutans strain UA-159     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 539898..551556
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NPS18_RS02805 (NPS18_02805) xseA 541205..542548 (+) 1344 WP_002262108.1 exodeoxyribonuclease VII large subunit -
  NPS18_RS02810 (NPS18_02810) - 542523..542744 (+) 222 WP_002262107.1 exodeoxyribonuclease VII small subunit -
  NPS18_RS02815 (NPS18_02815) - 542741..543610 (+) 870 WP_002262106.1 polyprenyl synthetase family protein -
  NPS18_RS02820 (NPS18_02820) - 543603..544430 (+) 828 WP_002262105.1 TlyA family rRNA (cytidine-2'-O)-methyltransferase -
  NPS18_RS02825 (NPS18_02825) - 544417..544881 (+) 465 WP_002262104.1 ArgR family transcriptional regulator -
  NPS18_RS02830 (NPS18_02830) recN 544898..546556 (+) 1659 WP_002262103.1 DNA repair protein RecN Machinery gene
  NPS18_RS02835 (NPS18_02835) - 546778..547617 (+) 840 WP_002262102.1 DegV family protein -
  NPS18_RS02840 (NPS18_02840) - 547610..548467 (+) 858 WP_002262101.1 SGNH/GDSL hydrolase family protein -
  NPS18_RS02845 (NPS18_02845) - 548442..549041 (+) 600 WP_002262100.1 YpmS family protein -
  NPS18_RS02850 (NPS18_02850) - 549138..549413 (+) 276 WP_002262099.1 HU family DNA-binding protein -
  NPS18_RS10125 - 549505..549642 (-) 138 Protein_526 IS3 family transposase -
  NPS18_RS02855 (NPS18_02855) - 549833..550951 (-) 1119 WP_002263257.1 hypothetical protein -

Sequence

Protein


Download         Length: 552 a.a.        Molecular weight: 62739.17 Da        Isoelectric Point: 5.0581

>NTDB_id=613595 NPS18_RS02830 WP_002262103.1 544898..546556(+) (recN) [Streptococcus mutans strain UA-159]
MLLEIAIKNFAIIEEISLNFERGMTVLTGETGAGKSIVIDAMNMMLGSRASIDVIRHGSPKAEIEGFFSVDKNPSLEQLL
ADQGIAFSDELIIRREILQNGRSISRINGQMVNLATLRAVGQYLVDIHGQHDQEELMRPQKHIQLLDEFGDEVFQVSKQH
YQDLFDHYRDLRKRVLNKRKNEQEHQARIEMLEYQIGEIEAANLQSGEDTKLLKQRDKLMNHKLIVDTLTNAYVLLDNED
FSSLTNVRSAMNDLQSLEEYDAEYKDLSNNLSESYYILEDVSKRLETILDHMDFDANTLVKLEARLDVINTITRKYGGSV
DDVLAYFDNISKEYNHLTVNDLAFDDMERELKVLERSLLEAAAQLSQKRHAIAETLSQEIKQELKDLYMDKADFKVVFTK
GKFNREGNETVAFHISTNPGEDFKPLVKVASGGELSRLMLAIKSAFSRREDKTSIVFDEVDTGVSGRVAQAIAQKIYKIG
NHGQVLAISHIPQVIAISDYQYFIEKQSSKATTVSTVRLLNQEERIEEIAKMLAGDNVTQAARQQAKELLKK

Nucleotide


Download         Length: 1659 bp        

>NTDB_id=613595 NPS18_RS02830 WP_002262103.1 544898..546556(+) (recN) [Streptococcus mutans strain UA-159]
ATGCTTTTAGAAATTGCCATTAAAAATTTTGCTATTATTGAAGAAATCTCACTCAATTTTGAAAGGGGAATGACTGTTCT
GACCGGTGAAACAGGTGCAGGGAAGTCTATTGTCATTGATGCCATGAATATGATGCTAGGCAGTAGAGCCAGCATAGATG
TCATTCGTCATGGTAGTCCTAAAGCAGAGATTGAGGGTTTTTTCTCTGTGGATAAAAATCCTTCTTTAGAGCAGTTACTG
GCTGATCAGGGAATTGCTTTTTCAGATGAGCTAATCATTCGCCGTGAGATTTTACAAAATGGTCGCAGTATTAGTCGTAT
CAATGGTCAAATGGTTAATCTGGCAACTCTGCGTGCCGTTGGGCAGTATTTAGTTGATATTCATGGACAGCATGATCAAG
AAGAACTGATGCGGCCGCAAAAGCATATTCAGTTGTTGGATGAATTTGGTGATGAGGTATTTCAGGTAAGCAAGCAGCAT
TATCAGGACTTATTTGACCACTATCGGGACTTACGTAAGCGCGTCTTGAATAAACGTAAGAATGAGCAAGAACATCAAGC
ACGTATTGAAATGCTGGAGTATCAGATAGGAGAGATTGAAGCAGCAAACTTACAATCTGGTGAGGATACCAAGCTCTTAA
AACAACGTGATAAACTTATGAATCATAAGCTTATTGTTGATACCTTAACCAATGCTTATGTTTTACTTGATAATGAAGAT
TTTTCGAGTTTGACCAATGTTCGTTCAGCTATGAATGATTTGCAGAGTTTGGAAGAATATGATGCTGAGTACAAGGATTT
ATCCAATAATCTCAGCGAATCTTACTATATTTTAGAAGATGTTAGCAAACGTCTAGAGACTATACTGGATCATATGGATT
TTGATGCCAATACTTTGGTTAAACTTGAAGCACGTCTTGATGTTATCAACACCATCACGCGTAAGTATGGTGGTTCAGTT
GATGATGTTTTGGCTTATTTTGACAATATCAGTAAGGAATACAATCATTTGACGGTAAATGACCTCGCTTTTGATGATAT
GGAAAGAGAACTAAAAGTTTTGGAGCGCTCACTATTAGAAGCAGCAGCTCAATTGAGTCAAAAACGCCATGCCATTGCGG
AAACCTTGTCTCAGGAGATTAAGCAGGAACTAAAAGATCTCTACATGGATAAGGCTGATTTTAAAGTTGTTTTTACTAAA
GGAAAATTTAATCGCGAGGGAAATGAAACAGTCGCTTTCCATATTTCGACTAATCCTGGCGAAGACTTTAAGCCTTTGGT
CAAAGTCGCTTCTGGTGGAGAGCTGTCTCGTCTCATGTTAGCCATTAAGTCAGCTTTTTCACGTCGTGAAGATAAGACTA
GCATTGTTTTTGATGAAGTTGATACAGGTGTTTCAGGACGTGTCGCTCAGGCTATTGCTCAAAAAATTTACAAAATAGGC
AATCACGGTCAAGTTTTAGCTATTTCCCATATCCCGCAAGTCATTGCCATCAGTGATTATCAGTACTTTATTGAAAAACA
AAGCAGCAAAGCCACAACTGTCTCAACGGTTCGCCTTTTAAATCAAGAGGAAAGAATTGAAGAAATCGCTAAGATGTTGG
CAGGGGATAATGTGACCCAAGCTGCGCGCCAGCAAGCTAAAGAACTATTAAAAAAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DVB0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

42.707

100

0.44