Detailed information    

insolico Bioinformatically predicted

Overview

Name   lytF   Type   Regulator
Locus tag   NPS18_RS01840 Genome accession   NZ_CP101984
Coordinates   348970..349605 (+) Length   211 a.a.
NCBI ID   WP_002264906.1    Uniprot ID   Q8DVU8
Organism   Streptococcus mutans strain UA-159     
Function   cell lysis (predicted from homology)   
Cell lysis

Genomic Context

Location: 343970..354605
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NPS18_RS01835 (NPS18_01835) - 347386..348822 (+) 1437 WP_002262483.1 glutamate synthase subunit beta -
  NPS18_RS01840 (NPS18_01840) lytF 348970..349605 (+) 636 WP_002264906.1 CHAP domain-containing protein Regulator
  NPS18_RS01845 (NPS18_01845) rnjA 349791..351473 (-) 1683 WP_002310842.1 ribonuclease J1 -
  NPS18_RS01850 (NPS18_01850) - 351475..351705 (-) 231 WP_002268030.1 DNA-dependent RNA polymerase subunit epsilon -
  NPS18_RS01855 (NPS18_01855) - 352167..353012 (+) 846 WP_002262479.1 ABC transporter ATP-binding protein -
  NPS18_RS01860 (NPS18_01860) - 353005..353718 (+) 714 WP_002262478.1 ABC transporter permease -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22470.57 Da        Isoelectric Point: 4.1028

>NTDB_id=613579 NPS18_RS01840 WP_002264906.1 348970..349605(+) (lytF) [Streptococcus mutans strain UA-159]
MKKQFLEKAVFTVAATAATVVLGNKMADADTYTLQEGDSFFSVAQRYHMDAYELASMNGKDITSLILPGQTLTVNGSAAP
DNQAAAPTDTTQATTETNDANANTYPVGQCTWGVKAVATWAGDWWGNGGDWASSASAQGYTVGNTPAVGSIMCWTDGGYG
HVAYVTAVGEDGKVQVLESNYKDQQWVDNYRGWFDPNNSGTPGSVSYIYPN

Nucleotide


Download         Length: 636 bp        

>NTDB_id=613579 NPS18_RS01840 WP_002264906.1 348970..349605(+) (lytF) [Streptococcus mutans strain UA-159]
ATGAAAAAACAATTTTTGGAAAAAGCTGTGTTTACTGTTGCGGCTACGGCAGCAACAGTTGTTTTAGGAAATAAAATGGC
TGATGCAGACACTTATACTCTTCAAGAAGGAGATTCTTTTTTCAGTGTTGCTCAACGATATCATATGGATGCTTATGAGT
TAGCTTCTATGAATGGAAAAGATATTACCAGTCTGATTTTGCCGGGTCAGACTTTAACTGTTAATGGTTCGGCAGCACCG
GATAATCAGGCGGCAGCGCCAACTGACACTACGCAAGCAACCACTGAAACGAATGATGCGAATGCCAATACTTATCCTGT
TGGTCAATGTACTTGGGGGGTTAAAGCTGTTGCAACTTGGGCAGGCGACTGGTGGGGCAATGGCGGTGATTGGGCCTCTA
GTGCTTCTGCACAAGGTTACACTGTCGGTAACACTCCGGCAGTAGGGTCTATTATGTGTTGGACAGATGGTGGTTATGGA
CATGTTGCCTATGTCACAGCTGTTGGTGAAGATGGTAAAGTTCAAGTACTGGAATCCAATTATAAAGATCAACAATGGGT
TGATAACTATCGTGGTTGGTTTGATCCAAATAATAGTGGAACACCAGGCAGTGTCAGTTATATTTATCCTAACTAA

Domains

Predicted by InterProScan.

CHAP domain (CHAP)

(102-180)

LysM domain (LysM)

(32-74)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DVU8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lytF Streptococcus gordonii strain NCTC7865

55.072

65.403

0.36