Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LGM12_RS16895 Genome accession   NZ_CP084856
Coordinates   3414251..3414847 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain SB1170     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3409251..3419847
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LGM12_RS16880 (LGM12_16880) helD 3409459..3411513 (-) 2055 WP_009485779.1 DNA helicase IV -
  LGM12_RS16885 (LGM12_16885) - 3411638..3412084 (+) 447 WP_002898425.1 YccF domain-containing protein -
  LGM12_RS16890 (LGM12_16890) yccS 3412102..3414237 (+) 2136 WP_009485780.1 YccS family putative transporter -
  LGM12_RS16895 (LGM12_16895) sxy/tfoX 3414251..3414847 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  LGM12_RS16900 (LGM12_16900) sulA 3415196..3415705 (+) 510 WP_004179215.1 SOS-induced cell division inhibitor SulA -
  LGM12_RS16905 (LGM12_16905) ompA 3416058..3417128 (+) 1071 WP_002898408.1 porin OmpA -
  LGM12_RS16910 (LGM12_16910) matP 3417260..3417712 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  LGM12_RS16915 (LGM12_16915) - 3417898..3419655 (+) 1758 WP_004147851.1 AAA family ATPase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=613496 LGM12_RS16895 WP_004179217.1 3414251..3414847(-) (sxy/tfoX) [Klebsiella pneumoniae strain SB1170]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=613496 LGM12_RS16895 WP_004179217.1 3414251..3414847(-) (sxy/tfoX) [Klebsiella pneumoniae strain SB1170]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTATTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51