Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LGM15_RS17215 Genome accession   NZ_CP084843
Coordinates   3398491..3399087 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain SB611     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3393491..3404087
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LGM15_RS17200 (LGM15_17200) helD 3393699..3395753 (-) 2055 WP_004179218.1 DNA helicase IV -
  LGM15_RS17205 (LGM15_17205) - 3395878..3396324 (+) 447 WP_002898425.1 YccF domain-containing protein -
  LGM15_RS17210 (LGM15_17210) yccS 3396342..3398477 (+) 2136 WP_159211737.1 YccS family putative transporter -
  LGM15_RS17215 (LGM15_17215) sxy/tfoX 3398491..3399087 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  LGM15_RS17220 (LGM15_17220) sulA 3399436..3399945 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  LGM15_RS17225 (LGM15_17225) ompA 3400298..3401368 (+) 1071 WP_002898408.1 porin OmpA -
  LGM15_RS17230 (LGM15_17230) - 3401414..3402616 (-) 1203 WP_072072858.1 ISL3 family transposase -
  LGM15_RS17235 (LGM15_17235) matP 3402831..3403283 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=613450 LGM15_RS17215 WP_004179217.1 3398491..3399087(-) (sxy/tfoX) [Klebsiella pneumoniae strain SB611]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=613450 LGM15_RS17215 WP_004179217.1 3398491..3399087(-) (sxy/tfoX) [Klebsiella pneumoniae strain SB611]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGAAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51