Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RSAU_RS10350 Genome accession   NC_022222
Coordinates   2068419..2068814 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus subsp. aureus 6850     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2063419..2073814
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RSAU_RS10320 (RSAU_001930) thiE 2064018..2064659 (-) 642 WP_000483165.1 thiamine phosphate synthase -
  RSAU_RS10325 (RSAU_001931) thiM 2064661..2065452 (-) 792 WP_020977448.1 hydroxyethylthiazole kinase -
  RSAU_RS10330 (RSAU_001932) thiD 2065436..2066266 (-) 831 WP_000594962.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  RSAU_RS10335 (RSAU_001933) tenA 2066259..2066948 (-) 690 WP_000396067.1 thiaminase II -
  RSAU_RS10345 (RSAU_001934) sceD 2067335..2068030 (-) 696 WP_000751996.1 lytic transglycosylase SceD -
  RSAU_RS10350 (RSAU_001935) ssb 2068419..2068814 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  RSAU_RS10355 (RSAU_001936) - 2069008..2069448 (+) 441 WP_000846746.1 YwpF-like family protein -
  RSAU_RS10360 (RSAU_001937) fabZ 2069505..2069945 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  RSAU_RS10365 (RSAU_001938) murA 2069979..2071244 (-) 1266 WP_000358002.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  RSAU_RS10370 (RSAU_001939) - 2071355..2071588 (-) 234 WP_000384520.1 DUF1146 family protein -
  RSAU_RS14600 - 2071720..2071813 (-) 94 Protein_1969 hypothetical protein -
  RSAU_RS10375 (RSAU_001940) - 2072184..2072588 (-) 405 WP_020977449.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=61342 RSAU_RS10350 WP_000932694.1 2068419..2068814(-) (ssb) [Staphylococcus aureus subsp. aureus 6850]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=61342 RSAU_RS10350 WP_000932694.1 2068419..2068814(-) (ssb) [Staphylococcus aureus subsp. aureus 6850]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment