Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   NP434_RS18635 Genome accession   NZ_CP101936
Coordinates   3640731..3641864 (-) Length   377 a.a.
NCBI ID   WP_256683041.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain BGSC 10A5     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3635731..3646864
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NP434_RS18595 (NP434_18595) ywnA 3635861..3636262 (-) 402 WP_256683039.1 Rrf2 family transcriptional regulator -
  NP434_RS18600 (NP434_18600) ureC 3636397..3638106 (-) 1710 WP_086344415.1 urease subunit alpha -
  NP434_RS18605 (NP434_18605) ureB 3638103..3638477 (-) 375 WP_015251023.1 urease subunit beta -
  NP434_RS18610 (NP434_18610) ureA 3638474..3638791 (-) 318 WP_003227724.1 urease subunit gamma -
  NP434_RS18615 (NP434_18615) - 3638986..3639144 (-) 159 WP_124059325.1 hypothetical protein -
  NP434_RS20985 - 3639410..3639622 (-) 213 Protein_3613 urea ABC transporter substrate-binding protein -
  NP434_RS18625 (NP434_18625) csbD 3639835..3640023 (-) 189 WP_015251021.1 stress response protein CsbD -
  NP434_RS18630 (NP434_18630) - 3640096..3640575 (-) 480 WP_003244390.1 hypothetical protein -
  NP434_RS18635 (NP434_18635) rapC 3640731..3641864 (-) 1134 WP_256683041.1 response regulator aspartate phosphatase RapB Regulator
  NP434_RS18640 (NP434_18640) moaA 3642056..3643081 (-) 1026 WP_015483814.1 GTP 3',8-cyclase MoaA -
  NP434_RS18645 (NP434_18645) fdhD 3643097..3643885 (-) 789 WP_014481178.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  NP434_RS18650 (NP434_18650) - 3644118..3644279 (-) 162 WP_003227706.1 hypothetical protein -
  NP434_RS18655 (NP434_18655) ywmD 3644374..3645048 (-) 675 WP_003243553.1 VWA domain-containing protein -
  NP434_RS18660 (NP434_18660) - 3645101..3645241 (-) 141 WP_003227702.1 hypothetical protein -
  NP434_RS18665 (NP434_18665) ywmC 3645373..3646056 (-) 684 WP_003227700.1 VWA domain-containing protein -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 45055.21 Da        Isoelectric Point: 4.8005

>NTDB_id=613397 NP434_RS18635 WP_256683041.1 3640731..3641864(-) (rapC) [Bacillus subtilis subsp. subtilis strain BGSC 10A5]
MAAYEIPSSQVGVKINKWYKHILAFQVADAVKLKEEIDLDIEQMEEDQLLLLYYQLISYRHQIMLDYVKPDLHEESQLQY
RELIKTLESNQDSISGLSEYYFHLFRGMYEFEQNNYISAISFYRKAEKMLAFVEDEIERAEFHFKVAEVFYIMKQTHFSM
NHAVQALETYKAHDFYRVRRIQCHFVISGNYIDYRNYEKALEHLDDAYRLALLEGQPRLIGSALYNIGNCYDDKGELDQA
AEYFEKALPVFEDYQLEQLPKALFSLTRVLFKKQDSEAAMRYYEKGIAIAQKRNDFFSLAKYKFLQALYVESVNLNMIQE
VFDYMEEKGLYVYIEEFALDAASYFSHREQYKEAVYFYEKAVSMREMIQRNDCLYEV

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=613397 NP434_RS18635 WP_256683041.1 3640731..3641864(-) (rapC) [Bacillus subtilis subsp. subtilis strain BGSC 10A5]
ATGGCCGCGTACGAGATCCCGTCATCTCAAGTAGGAGTGAAAATCAATAAGTGGTATAAGCACATTTTAGCATTTCAAGT
GGCTGATGCCGTAAAGCTGAAGGAAGAAATTGATCTAGATATCGAACAGATGGAAGAGGATCAGCTGCTTCTCCTGTATT
ATCAGCTGATCAGCTACCGGCACCAAATTATGCTGGATTATGTAAAGCCTGACCTGCACGAGGAATCTCAGCTTCAATAT
CGTGAATTGATCAAAACGCTGGAAAGCAATCAGGACAGCATCTCCGGATTATCTGAGTATTATTTTCACTTGTTTAGAGG
AATGTACGAATTTGAACAGAATAATTACATCTCGGCTATATCCTTTTATCGGAAAGCTGAGAAGATGCTTGCGTTTGTAG
AAGATGAAATTGAAAGAGCGGAATTTCATTTTAAAGTGGCGGAAGTCTTTTATATTATGAAGCAGACGCACTTTTCCATG
AACCATGCCGTACAGGCGCTGGAGACGTATAAGGCTCACGATTTTTACAGAGTCAGAAGAATTCAATGCCATTTCGTCAT
ATCAGGAAACTACATTGACTACAGAAATTATGAAAAAGCGCTTGAGCATTTGGATGACGCCTATCGCCTTGCTTTATTGG
AAGGACAGCCCCGTTTGATCGGATCAGCCCTTTATAATATTGGTAATTGCTATGATGACAAGGGGGAGCTGGATCAGGCC
GCCGAATACTTTGAAAAAGCGCTTCCTGTCTTCGAGGATTATCAGCTGGAACAGCTTCCAAAAGCGCTCTTCAGCCTGAC
TCGCGTTCTTTTCAAAAAACAAGATAGCGAAGCCGCGATGCGGTACTATGAAAAAGGGATTGCCATTGCCCAAAAACGAA
ACGACTTCTTCAGTCTGGCAAAATATAAATTTCTGCAGGCATTATATGTGGAATCTGTCAATTTGAATATGATTCAAGAA
GTATTTGATTATATGGAAGAAAAGGGCCTGTATGTATATATTGAAGAATTTGCTTTAGATGCTGCCTCCTATTTCAGTCA
TCGCGAACAATATAAAGAAGCGGTGTATTTTTATGAAAAAGCGGTCAGCATGAGAGAGATGATTCAAAGGAACGATTGTT
TATATGAAGTATGA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)

MalT-like TPR region (TPR_MalT)

(154-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

42.632

100

0.43
  rapF Bacillus subtilis subsp. subtilis str. 168

42.667

99.469

0.424