Detailed information    

insolico Bioinformatically predicted

Overview

Name   helD   Type   Machinery gene
Locus tag   NP434_RS16945 Genome accession   NZ_CP101936
Coordinates   3290210..3292534 (-) Length   774 a.a.
NCBI ID   WP_256682974.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain BGSC 10A5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3285210..3297534
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NP434_RS16935 (NP434_16935) cysI 3286481..3288196 (-) 1716 WP_003243849.1 assimilatory sulfite reductase (NADPH) hemoprotein subunit -
  NP434_RS16940 (NP434_16940) cysJ 3288222..3290039 (-) 1818 WP_256682973.1 assimilatory sulfite reductase (NADPH) flavoprotein subunit -
  NP434_RS16945 (NP434_16945) helD 3290210..3292534 (-) 2325 WP_256682974.1 DNA helicase IV Machinery gene
  NP434_RS16950 (NP434_16950) yvgT 3292732..3293340 (-) 609 WP_003219999.1 trimeric intracellular cation channel family protein -
  NP434_RS16955 (NP434_16955) bdbC 3293527..3293943 (-) 417 WP_003228417.1 disulfide oxidoreductase -
  NP434_RS16960 (NP434_16960) bdbD 3293948..3294616 (-) 669 WP_003228414.1 disulfide bond formation protein BdbD -
  NP434_RS16965 (NP434_16965) cadA 3294736..3296844 (-) 2109 WP_256682975.1 heavy metal translocating P-type ATPase -

Sequence

Protein


Download         Length: 774 a.a.        Molecular weight: 89945.70 Da        Isoelectric Point: 6.6471

>NTDB_id=613387 NP434_RS16945 WP_256682974.1 3290210..3292534(-) (helD) [Bacillus subtilis subsp. subtilis strain BGSC 10A5]
MNQQDKEWKEEQSRIDEVLQVLKKKERFLETSAGGLKHDIIGLRKSFWEDVKVNFDDAHEAIETMASIKQQAELLSDREQ
NHRRMDQQLKRIHRLKKSPYFGRIDFIENGEAEAERIYIGLASCLDEKEEHFLIYDWRAPISSLYYNYSPGKAEYEVPGE
TIEGEMVLKRQFMIKNGDLKAMFNTDMTIGDEMLQEVLSHHSDTQMKNIVSTIQKEQNQIIRNEKSKILIVQGAAGSGKT
SAALQRVAYLLYRHRGVIDAGQIVLFSPNFLFNSYVSSVLPELGEENMEQATFQEYIEHRLGRKFKCESPFDQLEYCLTE
TKGGDFPTRLAGIIWKAGLSFQQFINEYVTRLSSEGMIFKNIIFRGQKLITKEQIQSYFYSLDQNHSIPNRMEQTAKWLL
SELNKLEKKERRKDWVVHEAELLDKEDYLDVYKKLQERKRFSESTFNDYQREQQLLAAIIVKKAFKPLKQAVRLLAFLDV
TQLYLQLFSGWGGKFQHEKMDAIGELTRSAFTDNKLLYEDAAPFLYMQDLIESRKKNTKIKHLFIDEAQDYSPFQMAYMR
SIFPAASMTVLGDINQSIYAHTIHGDQRMDACFEDEPAEYVRLKRTYRSTRQIVEFTKAMLQDGADIEPFNRSGEMPLVV
KTEGHESLCQKLAQEIGRLKKKGHETIAVICKTAQQCIQAHAHMSEYTDVRLIHKENQPFQKGVCVIPVYLAKGIEFDAV
LVYDASEEHYHTEHDRRLLYTACTRAMHMLAVFYTGEASPFVTAVPPRLYQIAE

Nucleotide


Download         Length: 2325 bp        

>NTDB_id=613387 NP434_RS16945 WP_256682974.1 3290210..3292534(-) (helD) [Bacillus subtilis subsp. subtilis strain BGSC 10A5]
ATGAATCAGCAGGATAAGGAATGGAAGGAAGAGCAGTCGAGAATAGATGAGGTGCTGCAGGTGCTCAAAAAAAAAGAGCG
GTTTCTGGAAACGTCTGCGGGCGGGTTGAAGCATGATATCATCGGATTAAGAAAAAGCTTTTGGGAGGATGTTAAGGTTA
ATTTTGATGATGCCCATGAAGCGATTGAAACGATGGCAAGCATTAAGCAGCAGGCAGAGCTGCTGTCTGATCGGGAACAG
AATCATCGGCGCATGGATCAGCAGCTCAAACGAATTCATCGATTGAAAAAATCGCCTTATTTCGGCCGGATTGATTTTAT
TGAAAACGGCGAGGCGGAGGCAGAGCGAATTTATATCGGTTTAGCTTCCTGTTTGGATGAGAAGGAGGAACACTTTCTAA
TCTATGACTGGAGGGCGCCGATATCAAGTTTGTACTACAATTATTCTCCAGGAAAAGCGGAGTACGAGGTGCCCGGTGAA
ACGATAGAAGGGGAAATGGTGCTGAAACGCCAGTTTATGATCAAAAACGGCGATCTCAAGGCGATGTTTAATACCGATAT
GACGATTGGCGATGAAATGCTGCAAGAGGTATTAAGCCATCACTCCGATACCCAAATGAAAAACATCGTGTCTACGATTC
AGAAAGAACAAAATCAGATTATCCGTAATGAAAAAAGCAAGATCCTGATCGTGCAGGGAGCGGCTGGCAGCGGGAAAACA
TCGGCTGCGCTTCAGCGTGTCGCTTATTTGTTATACAGGCACCGCGGCGTCATTGATGCCGGACAAATCGTTTTGTTTTC
TCCCAACTTCTTATTTAACAGCTATGTCTCCTCTGTTTTGCCGGAGTTAGGAGAAGAGAATATGGAGCAGGCGACGTTTC
AGGAATATATCGAGCATCGTCTTGGCCGCAAGTTCAAATGTGAAAGCCCCTTTGATCAGCTCGAATATTGCCTGACCGAA
ACAAAGGGAGGCGATTTTCCAACAAGGCTTGCGGGAATCATATGGAAGGCGGGTTTATCCTTTCAGCAATTCATTAATGA
ATACGTCACACGGCTTTCCTCTGAAGGGATGATTTTTAAAAATATTATATTCCGCGGACAAAAGCTGATCACAAAGGAGC
AAATTCAATCCTATTTTTACTCATTGGATCAAAATCACTCCATTCCGAATCGGATGGAGCAAACCGCGAAGTGGCTGCTG
AGTGAGCTTAACAAGCTTGAGAAAAAGGAACGGCGAAAGGATTGGGTTGTTCATGAAGCTGAGCTGCTTGACAAAGAGGA
CTACTTGGACGTGTACAAAAAACTGCAGGAAAGGAAACGGTTCAGCGAGAGTACGTTTAACGATTATCAAAGAGAGCAGC
AGCTGCTTGCCGCCATCATTGTGAAAAAAGCTTTCAAACCGCTCAAACAGGCGGTCAGACTCCTTGCATTTCTTGATGTT
ACACAACTTTATTTGCAATTGTTTTCTGGCTGGGGAGGAAAATTTCAGCATGAGAAGATGGATGCGATAGGTGAGCTGAC
CCGTTCGGCATTTACGGATAATAAATTGCTCTATGAGGACGCGGCACCGTTTCTTTATATGCAGGATCTGATTGAGAGCA
GAAAGAAAAATACGAAGATCAAACATCTATTTATTGACGAAGCACAGGACTATTCACCGTTTCAGATGGCTTACATGAGA
AGCATTTTTCCGGCTGCCAGCATGACAGTGCTCGGTGATATCAATCAGTCCATCTACGCGCATACCATACACGGGGATCA
GCGTATGGATGCGTGCTTTGAGGATGAGCCTGCTGAGTATGTTCGTTTAAAGAGAACATACAGATCAACAAGGCAGATTG
TCGAGTTTACCAAAGCGATGCTTCAAGATGGAGCGGATATTGAGCCGTTTAATAGAAGCGGGGAAATGCCGCTCGTTGTC
AAAACTGAAGGACATGAGAGCCTTTGCCAAAAGCTCGCGCAAGAAATTGGACGGCTCAAGAAAAAAGGGCACGAAACAAT
AGCCGTCATCTGCAAGACTGCGCAGCAATGCATACAGGCGCACGCCCACATGAGTGAATATACAGATGTTCGCCTGATTC
ATAAAGAAAATCAACCATTCCAAAAGGGTGTTTGCGTGATTCCGGTGTATTTAGCAAAGGGAATTGAATTTGACGCAGTG
CTTGTCTATGATGCATCTGAAGAACACTATCATACAGAGCACGACCGCAGGCTTTTATATACTGCGTGCACCCGTGCGAT
GCACATGCTGGCGGTATTTTATACAGGTGAAGCCAGTCCGTTTGTAACCGCTGTGCCGCCTCGCTTATATCAGATTGCTG
AATGA

Domains

Predicted by InterProScan.

AAA domain (AAA_19)

(217-580)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(704-751)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  helD Bacillus subtilis subsp. subtilis str. 168

98.32

100

0.983