Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LGM18_RS16975 Genome accession   NZ_CP084825
Coordinates   3388901..3389497 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain SB617     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3383901..3394497
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LGM18_RS16960 (LGM18_16960) helD 3384109..3386163 (-) 2055 WP_117039845.1 DNA helicase IV -
  LGM18_RS16965 (LGM18_16965) - 3386288..3386734 (+) 447 WP_021312905.1 YccF domain-containing protein -
  LGM18_RS16970 (LGM18_16970) yccS 3386752..3388887 (+) 2136 WP_117039846.1 YccS family putative transporter -
  LGM18_RS16975 (LGM18_16975) sxy/tfoX 3388901..3389497 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  LGM18_RS16980 (LGM18_16980) sulA 3389846..3390355 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  LGM18_RS16985 (LGM18_16985) ompA 3390708..3391778 (+) 1071 WP_002898408.1 porin OmpA -
  LGM18_RS16990 (LGM18_16990) matP 3391910..3392362 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  LGM18_RS16995 (LGM18_16995) - 3392548..3394305 (+) 1758 WP_004147851.1 AAA family ATPase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=613379 LGM18_RS16975 WP_004179217.1 3388901..3389497(-) (sxy/tfoX) [Klebsiella pneumoniae strain SB617]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=613379 LGM18_RS16975 WP_004179217.1 3388901..3389497(-) (sxy/tfoX) [Klebsiella pneumoniae strain SB617]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGAAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGTTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51