Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   NP434_RS10400 Genome accession   NZ_CP101936
Coordinates   2096277..2098052 (-) Length   591 a.a.
NCBI ID   WP_038429123.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain BGSC 10A5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2091277..2103052
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NP434_RS10380 (NP434_10380) desE 2091653..2092711 (+) 1059 WP_021481458.1 fatty acid desaturase DesE -
  NP434_RS10385 (NP434_10385) desK 2092830..2093942 (+) 1113 WP_256682833.1 two-component sensor histidine kinase DesK -
  NP434_RS10390 (NP434_10390) desR 2093961..2094560 (+) 600 WP_004399356.1 two-component system response regulator DesR -
  NP434_RS10395 (NP434_10395) walN 2095166..2096029 (-) 864 WP_014480017.1 LysM peptidoglycan-binding and 3D domain-containing protein -
  NP434_RS10400 (NP434_10400) recQ 2096277..2098052 (-) 1776 WP_038429123.1 DNA helicase RecQ Machinery gene
  NP434_RS10410 (NP434_10410) azoJ 2098617..2099243 (-) 627 WP_003231260.1 FMN-dependent NADH-azoreductase AzoJ -
  NP434_RS10415 (NP434_10415) stpP 2099394..2099885 (-) 492 WP_003231259.1 TraR/DksA family transcriptional regulator -
  NP434_RS10420 (NP434_10420) - 2099960..2100292 (-) 333 WP_003231257.1 hypothetical protein -
  NP434_RS10425 (NP434_10425) - 2100370..2100597 (+) 228 WP_015383862.1 hypothetical protein -
  NP434_RS10430 (NP434_10430) yocM 2100584..2101060 (-) 477 WP_003231255.1 salt stress-responsive protein YocM -
  NP434_RS10435 (NP434_10435) - 2101127..2101390 (+) 264 WP_004399338.1 hypothetical protein -
  NP434_RS10440 (NP434_10440) - 2101395..2101628 (+) 234 WP_003231251.1 hypothetical protein -
  NP434_RS10445 (NP434_10445) yozO 2101708..2102052 (-) 345 WP_003220141.1 PH domain-containing protein -
  NP434_RS10450 (NP434_10450) yozC 2102406..2102609 (-) 204 WP_003231245.1 DUF6501 family protein -

Sequence

Protein


Download         Length: 591 a.a.        Molecular weight: 67402.86 Da        Isoelectric Point: 6.1774

>NTDB_id=613339 NP434_RS10400 WP_038429123.1 2096277..2098052(-) (recQ) [Bacillus subtilis subsp. subtilis strain BGSC 10A5]
MLHRAQSLLAHYFGYEKFRSGQDEAIRLVTEARQNTACIMPTGGGKSICYQIPALMFEGTTIVISPLISLMKDQVDALEE
AGINAAYINSTQSNQEIYERLNGLKEGAYKLFYITPERLTSTEFIRILQGIDVPLVAIDEAHCISQWGHDFRPSYRNIEI
LFRELHDKPVIMALTATATPEVHDDICKQLHIQKENTVYTGFSRDNLTFKVVKGENKDRFIDEYVQNNRHEAGIVYTATR
KEADRIYERLKRNQVRAGRYHGGMADDERKEQQERFLNDELQVMVATSAFGMGIDKSNIRFVLHAQIPKDMESYYQEAGR
AGRDGLASECVLLFSPQDIMVQRFLIEQSEHEEKQKQDLKKLRQMVDYCHTEDCLQRFILMYFGEKEPDACGQCGNCTDT
RAVHDVTREAQMVLSCIIRMKERFGKTMVAQVLAGSKNKKVLENGFSDLSTYGILKHQSVGEISDFIEFLISDDFIRMSD
GTFPTLFVSSKGRNVLKGELSVARKEALKAAAITENDELFERLRMVRKEIAAEQGVPPFVVFSDQTLKEMSGKQPVNDDE
LLSIKGVGEQKRAKYGRLFLQEIQAYARMTD

Nucleotide


Download         Length: 1776 bp        

>NTDB_id=613339 NP434_RS10400 WP_038429123.1 2096277..2098052(-) (recQ) [Bacillus subtilis subsp. subtilis strain BGSC 10A5]
ATGTTACATAGAGCCCAATCCCTTCTGGCTCATTATTTTGGTTATGAGAAGTTTCGGAGCGGCCAAGATGAAGCGATCCG
CTTGGTGACGGAAGCGAGGCAAAATACGGCCTGCATTATGCCGACGGGAGGCGGCAAATCGATTTGCTATCAGATTCCGG
CATTAATGTTTGAAGGGACGACGATCGTCATTTCACCGTTGATTTCCTTGATGAAGGATCAAGTTGATGCGTTAGAAGAA
GCGGGGATTAACGCCGCCTACATTAACAGCACACAATCCAATCAGGAAATATATGAGAGGCTGAACGGACTCAAAGAAGG
GGCTTATAAGCTTTTTTACATTACACCAGAGCGACTAACGTCCACAGAGTTTATCCGGATTTTGCAGGGCATAGATGTTC
CTCTGGTCGCAATAGACGAGGCGCACTGTATTTCTCAATGGGGCCATGATTTCAGGCCAAGCTACAGGAATATTGAAATC
TTGTTCCGTGAATTACACGACAAGCCTGTCATCATGGCGTTAACAGCAACAGCCACACCCGAGGTTCATGATGATATTTG
CAAACAGCTGCATATTCAAAAAGAAAACACGGTATATACCGGATTTTCCCGAGATAATTTAACCTTTAAAGTAGTAAAAG
GAGAAAATAAAGATCGGTTTATAGACGAATATGTACAAAACAACAGGCATGAAGCAGGAATTGTCTATACAGCGACCAGA
AAAGAAGCTGATCGGATATATGAGAGATTGAAACGAAATCAGGTCAGGGCAGGCCGGTATCATGGAGGTATGGCTGATGA
TGAGAGAAAAGAGCAGCAGGAAAGGTTTCTTAATGATGAGCTTCAAGTGATGGTGGCAACCTCTGCTTTTGGAATGGGTA
TTGATAAATCAAATATCAGATTTGTTCTGCATGCACAAATTCCGAAAGATATGGAAAGCTATTATCAAGAGGCAGGACGA
GCTGGACGGGACGGTCTTGCCAGTGAATGTGTTCTCCTGTTTTCACCGCAGGATATTATGGTGCAGCGCTTCTTAATTGA
GCAATCAGAACATGAAGAGAAACAAAAGCAGGATTTAAAAAAGCTGAGACAAATGGTCGACTACTGTCATACGGAAGATT
GTCTGCAGCGTTTTATCCTTATGTATTTCGGAGAAAAGGAGCCTGATGCGTGCGGACAGTGCGGAAACTGTACCGATACA
AGAGCGGTCCATGACGTGACGCGGGAGGCGCAAATGGTCTTATCTTGTATCATTCGCATGAAAGAACGGTTTGGCAAGAC
GATGGTTGCACAGGTGCTTGCCGGCTCCAAAAATAAAAAAGTTCTTGAAAACGGCTTTTCCGACCTTTCAACATACGGGA
TATTAAAACACCAATCCGTTGGCGAAATCAGTGATTTTATCGAATTTCTTATTTCTGATGACTTCATCAGGATGTCAGAC
GGAACGTTTCCGACTCTTTTTGTCAGCAGTAAAGGAAGGAATGTGCTGAAAGGAGAATTATCAGTAGCGAGAAAAGAAGC
GTTAAAAGCGGCAGCGATTACTGAAAATGACGAGCTATTTGAACGATTGCGCATGGTTCGGAAAGAAATTGCGGCTGAGC
AGGGTGTTCCGCCATTTGTTGTTTTCTCTGACCAAACGTTAAAAGAAATGTCAGGAAAACAGCCCGTAAATGATGATGAA
CTTTTGTCTATAAAAGGAGTCGGAGAACAAAAAAGAGCAAAATACGGCCGGCTTTTTTTACAAGAAATACAAGCTTATGC
AAGGATGACAGACTAA

Domains

Predicted by InterProScan.

RecQ zinc-binding (RecQ_Zn_bind)

(336-398)

DEAD/DEAH box helicase (DEAD)

(21-182)

HRDC domain (HRDC)

(518-583)

RQC domain (RQC)

(403-507)

Helicase conserved C-terminal domain (Helicase_C)

(218-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

99.154

100

0.992