Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   NP434_RS09150 Genome accession   NZ_CP101936
Coordinates   1772776..1773207 (+) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis subsp. subtilis strain BGSC 10A5     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1767776..1778207
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NP434_RS09130 (NP434_09130) spoVS 1768337..1768597 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  NP434_RS09135 (NP434_09135) tdh 1768863..1769906 (+) 1044 WP_076457704.1 L-threonine 3-dehydrogenase -
  NP434_RS09140 (NP434_09140) kbl 1769919..1771097 (+) 1179 WP_003231837.1 glycine C-acetyltransferase -
  NP434_RS09145 (NP434_09145) miaB 1771245..1772774 (+) 1530 WP_256683441.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  NP434_RS09150 (NP434_09150) ymcA 1772776..1773207 (+) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  NP434_RS09155 (NP434_09155) cotE 1773468..1774013 (+) 546 WP_003231833.1 outer spore coat protein CotE -
  NP434_RS09160 (NP434_09160) hexA 1774146..1776722 (+) 2577 WP_144482442.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=613333 NP434_RS09150 WP_003231834.1 1772776..1773207(+) (ymcA) [Bacillus subtilis subsp. subtilis strain BGSC 10A5]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=613333 NP434_RS09150 WP_003231834.1 1772776..1773207(+) (ymcA) [Bacillus subtilis subsp. subtilis strain BGSC 10A5]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCTCGAAACCTTGCAAAAATGATTTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAGATGGAAGTAAATGACCTATTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1