Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LGM21_RS17070 Genome accession   NZ_CP084818
Coordinates   3423083..3423679 (-) Length   198 a.a.
NCBI ID   WP_023289053.1    Uniprot ID   A0A2N4W2M8
Organism   Klebsiella quasipneumoniae subsp. quasipneumoniae strain 18A069     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3418083..3428679
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LGM21_RS17055 (LGM21_17055) helD 3418294..3420348 (-) 2055 WP_032455287.1 DNA helicase IV -
  LGM21_RS17060 (LGM21_17060) - 3420473..3420919 (+) 447 WP_004201437.1 YccF domain-containing protein -
  LGM21_RS17065 (LGM21_17065) yccS 3420937..3423072 (+) 2136 WP_023289054.1 YccS family putative transporter -
  LGM21_RS17070 (LGM21_17070) sxy/tfoX 3423083..3423679 (-) 597 WP_023289053.1 TfoX/Sxy family DNA transformation protein Regulator
  LGM21_RS17075 (LGM21_17075) - 3423697..3424002 (-) 306 WP_158238131.1 hypothetical protein -
  LGM21_RS17080 (LGM21_17080) sulA 3424028..3424537 (+) 510 WP_023289052.1 SOS-induced cell division inhibitor SulA -
  LGM21_RS17085 (LGM21_17085) ompA 3424890..3425960 (+) 1071 WP_032455308.1 porin OmpA -
  LGM21_RS17090 (LGM21_17090) matP 3426107..3426559 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  LGM21_RS17095 (LGM21_17095) - 3426745..3428502 (+) 1758 WP_032455286.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22670.34 Da        Isoelectric Point: 10.2333

>NTDB_id=613331 LGM21_RS17070 WP_023289053.1 3423083..3423679(-) (sxy/tfoX) [Klebsiella quasipneumoniae subsp. quasipneumoniae strain 18A069]
MRKLVCPRLPQFQACVSPLGQLHSRPLFGGYSLAIEDTVFAMVAEGNIYLKACEQSAAYRVEHHNPLLMLRRHGRIVPLK
YYQIDDALWRDEKQLFRLSLMSWQSAQREKYRRRSSGRLKDLPNISFHMELQLIHSGIPDVLALREVGARQAWLKLRENN
ASLSHNVLLALEGAIVGVHAAALPTPRRQELLEWASAR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=613331 LGM21_RS17070 WP_023289053.1 3423083..3423679(-) (sxy/tfoX) [Klebsiella quasipneumoniae subsp. quasipneumoniae strain 18A069]
ATGAGAAAACTCGTATGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCTCCGCTGGGCCAACTTCACTCTCGCCCCCT
GTTTGGCGGCTACAGCCTGGCTATCGAAGATACCGTGTTTGCGATGGTGGCAGAGGGGAATATTTATCTAAAGGCCTGCG
AGCAGAGCGCTGCCTATCGGGTAGAACACCATAATCCTTTATTGATGCTGCGCCGACACGGGCGCATCGTGCCGCTAAAG
TATTATCAAATCGACGATGCCTTGTGGCGCGATGAGAAACAGCTTTTCCGCTTGTCGCTGATGTCGTGGCAGAGCGCCCA
GCGTGAAAAATATCGCCGCCGGTCGTCGGGACGCCTGAAGGATTTACCCAATATCAGTTTTCATATGGAGTTGCAGCTGA
TTCACTCGGGCATTCCAGACGTGTTAGCACTACGGGAGGTGGGCGCCCGCCAGGCCTGGCTAAAGCTGCGCGAGAACAAT
GCTTCCCTATCGCACAACGTCTTGCTGGCGTTGGAGGGGGCTATCGTTGGCGTTCATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTGGAATGGGCGTCTGCGCGCTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(16-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N4W2M8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

49.746

99.495

0.495