Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LGM22_RS12295 Genome accession   NZ_CP084806
Coordinates   2545000..2545596 (+) Length   198 a.a.
NCBI ID   WP_023289053.1    Uniprot ID   A0A2N4W2M8
Organism   Klebsiella quasipneumoniae subsp. quasipneumoniae strain SB1124     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2540000..2550596
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LGM22_RS12270 (LGM22_12270) - 2540177..2541934 (-) 1758 WP_086075740.1 Lon protease family protein -
  LGM22_RS12275 (LGM22_12275) matP 2542120..2542572 (+) 453 WP_002898404.1 macrodomain Ter protein MatP -
  LGM22_RS12280 (LGM22_12280) ompA 2542719..2543789 (-) 1071 WP_023289051.1 porin OmpA -
  LGM22_RS12285 (LGM22_12285) sulA 2544142..2544651 (-) 510 WP_086075741.1 SOS-induced cell division inhibitor SulA -
  LGM22_RS12290 (LGM22_12290) - 2544677..2544982 (+) 306 WP_158241089.1 hypothetical protein -
  LGM22_RS12295 (LGM22_12295) sxy/tfoX 2545000..2545596 (+) 597 WP_023289053.1 TfoX/Sxy family DNA transformation protein Regulator
  LGM22_RS12300 (LGM22_12300) yccS 2545607..2547742 (-) 2136 WP_023289054.1 YccS family putative transporter -
  LGM22_RS12305 (LGM22_12305) - 2547760..2548206 (-) 447 WP_136070431.1 YccF domain-containing protein -
  LGM22_RS12310 (LGM22_12310) helD 2548331..2550385 (+) 2055 WP_086075743.1 DNA helicase IV -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22670.34 Da        Isoelectric Point: 10.2333

>NTDB_id=613307 LGM22_RS12295 WP_023289053.1 2545000..2545596(+) (sxy/tfoX) [Klebsiella quasipneumoniae subsp. quasipneumoniae strain SB1124]
MRKLVCPRLPQFQACVSPLGQLHSRPLFGGYSLAIEDTVFAMVAEGNIYLKACEQSAAYRVEHHNPLLMLRRHGRIVPLK
YYQIDDALWRDEKQLFRLSLMSWQSAQREKYRRRSSGRLKDLPNISFHMELQLIHSGIPDVLALREVGARQAWLKLRENN
ASLSHNVLLALEGAIVGVHAAALPTPRRQELLEWASAR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=613307 LGM22_RS12295 WP_023289053.1 2545000..2545596(+) (sxy/tfoX) [Klebsiella quasipneumoniae subsp. quasipneumoniae strain SB1124]
ATGAGAAAACTCGTATGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCTCCGCTGGGCCAACTTCACTCTCGCCCCCT
GTTTGGCGGCTACAGCCTGGCTATCGAAGATACCGTGTTTGCGATGGTGGCAGAGGGGAATATTTATCTAAAGGCCTGCG
AGCAGAGCGCTGCCTATCGGGTAGAACACCATAATCCTTTATTGATGCTGCGCCGACACGGGCGCATCGTGCCGCTAAAG
TATTATCAAATCGACGATGCCTTGTGGCGCGATGAGAAACAGCTTTTCCGCTTGTCGCTGATGTCGTGGCAGAGCGCCCA
GCGTGAAAAATATCGCCGCCGGTCGTCGGGACGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACTCGGGCATTCCAGACGTGTTAGCACTACGGGAGGTGGGCGCCCGCCAGGCCTGGCTAAAGCTGCGCGAGAACAAT
GCTTCTCTATCGCACAACGTCTTGCTGGCGCTGGAGGGGGCTATCGTTGGCGTTCATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTGGAATGGGCGTCTGCGCGCTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(16-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N4W2M8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

49.746

99.495

0.495