Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   NP434_RS03810 Genome accession   NZ_CP101936
Coordinates   731751..732881 (+) Length   376 a.a.
NCBI ID   WP_256683278.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain BGSC 10A5     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 726751..737881
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NP434_RS03790 (NP434_03790) - 727798..728109 (-) 312 WP_113713055.1 hypothetical protein -
  NP434_RS03795 (NP434_03795) - 728231..728623 (-) 393 WP_113713056.1 hypothetical protein -
  NP434_RS03800 (NP434_03800) - 728637..730406 (-) 1770 WP_113713057.1 T7SS effector LXG polymorphic toxin -
  NP434_RS03805 (NP434_03805) - 730586..731608 (+) 1023 WP_256683277.1 hypothetical protein -
  NP434_RS03810 (NP434_03810) rapC 731751..732881 (+) 1131 WP_256683278.1 response regulator aspartate phosphatase RapH Regulator
  NP434_RS03815 (NP434_03815) phrH 732871..733044 (+) 174 WP_003242557.1 phosphatase RapH inhibitor PhrH -
  NP434_RS03820 (NP434_03820) yeeI 733204..733923 (+) 720 WP_003233863.1 YebC/PmpR family DNA-binding transcriptional regulator -
  NP434_RS03825 (NP434_03825) yeeK 734057..734497 (+) 441 WP_015252624.1 spore coat protein YeeK -
  NP434_RS03830 (NP434_03830) yezE 734612..735196 (+) 585 WP_015252623.1 TetR/AcrR family transcriptional regulator -
  NP434_RS03835 (NP434_03835) yesE 735275..735718 (+) 444 WP_003233857.1 nuclear transport factor 2 family protein -
  NP434_RS03840 (NP434_03840) yesF 735715..736583 (+) 869 Protein_708 NAD-dependent epimerase/dehydratase family protein -
  NP434_RS03845 (NP434_03845) cotJA 736710..736958 (+) 249 WP_003219489.1 spore coat-associated protein CotJA -
  NP434_RS03850 (NP434_03850) cotJB 736942..737205 (+) 264 WP_003219491.1 spore coat protein CotJB -
  NP434_RS03855 (NP434_03855) cotJC 737220..737789 (+) 570 WP_003233850.1 spore coat protein CotJC -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 43963.24 Da        Isoelectric Point: 5.8846

>NTDB_id=613287 NP434_RS03810 WP_256683278.1 731751..732881(+) (rapC) [Bacillus subtilis subsp. subtilis strain BGSC 10A5]
MSQAIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGQPYGNRPTVT
ELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDEIEKAEFHFKVAEAYYHMKQTHVSMH
HILQALDIYQNNPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLETALKLATDIQNDRFIAISLLNIANSYDRSGDDQMAV
EHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDL
LSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILKGECLYAY

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=613287 NP434_RS03810 WP_256683278.1 731751..732881(+) (rapC) [Bacillus subtilis subsp. subtilis strain BGSC 10A5]
TTGAGTCAAGCCATACCGTCTTCGCGTGTAGGTGTTAAGATTAATGAATGGTATAAAATGATTCGCCAGTTCAGTGTTCC
GGATGCTGAGATTCTGAAAGCGGAGGTGGAGCAGGACATTCAGCAAATGGAAGAAGACCAGGATTTGCTGATCTATTATT
CTCTGATGTGTTTTCGTCACCAGCTGATGCTGGATTATTTGGAGCCGGGACAGCCTTACGGGAATCGCCCTACAGTGACA
GAGCTTCTTGAAACGATTGAGACCCCTCAGAAAAAACTCACAGGCCTTTTGAAATATTACTCTTTGTTTTTCCGCGGCAT
GTATGAATTTGATCAAAAAGAATATGTTGAAGCCATCGGGTATTATCGCGAGGCGGAGAAAGAACTGCCGTTTGTGTCAG
ATGAAATTGAGAAAGCGGAATTCCATTTTAAAGTGGCCGAAGCGTATTATCACATGAAGCAAACCCATGTGTCGATGCAT
CATATTCTTCAAGCCTTAGACATTTATCAAAATAATCCCCTATACAGCATTAGAACGATACAAAGCTTGTTTGTGATCGC
CGGCAATTATGATGATTTCAAACATTATGATAAAGCGCTCCCGCATTTAGAGACGGCGCTCAAATTGGCAACGGACATTC
AAAACGATCGGTTTATCGCCATTTCTCTATTGAACATTGCAAACAGCTATGACAGATCAGGAGACGATCAGATGGCTGTA
GAACATTTCCAAAAAGCGGCGAAAGTAAGCAGAGAGAAAGTGCCTGATCTGCTTCCGAAAGTCTTGTTTGGATTAAGCTG
GACATTATGTAAAGCGGGCCAAACACAGAAGGCGTTTCAGTTCATAGAGGAAGGATTAGACCATATCACAGCACGTTCTC
ACAAATTTTATAAAGAATTGTTTCTGTTCTTGCAGGCCGTGTACAAGGAGACTGTTGATGAACGAAAAATTCATGATCTT
TTAAGCTATTTCGAAAAAAAGAACCTGCACGCTTACATTGAAGCATGTGCCCGGAGTGCTGCCGCTGTTTTTGAAAGCAG
CTGTCACTTTGAACAAGCAGCTGCGTTTTATCGGAAAGTGCTGAAAGCCCAAGAAGATATTCTAAAAGGAGAGTGTTTAT
ATGCCTATTAA

Domains

Predicted by InterProScan.

Tetratricopeptide repeat (TPR_7)

(222-251)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

40.691

100

0.407
  rapF Bacillus subtilis subsp. subtilis str. 168

39.788

100

0.399