Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LGM23_RS17435 Genome accession   NZ_CP084803
Coordinates   3537483..3538079 (-) Length   198 a.a.
NCBI ID   WP_023289053.1    Uniprot ID   A0A2N4W2M8
Organism   Klebsiella quasipneumoniae subsp. quasipneumoniae strain SB98     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3532483..3543079
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LGM23_RS17420 (LGM23_17420) helD 3532695..3534749 (-) 2055 WP_101991843.1 DNA helicase IV -
  LGM23_RS17425 (LGM23_17425) - 3534873..3535319 (+) 447 WP_004201437.1 YccF domain-containing protein -
  LGM23_RS17430 (LGM23_17430) yccS 3535337..3537472 (+) 2136 WP_117264707.1 YccS family putative transporter -
  LGM23_RS17435 (LGM23_17435) sxy/tfoX 3537483..3538079 (-) 597 WP_023289053.1 TfoX/Sxy family DNA transformation protein Regulator
  LGM23_RS17440 (LGM23_17440) - 3538097..3538402 (-) 306 WP_168443682.1 hypothetical protein -
  LGM23_RS17445 (LGM23_17445) sulA 3538428..3538937 (+) 510 WP_023289052.1 SOS-induced cell division inhibitor SulA -
  LGM23_RS17450 (LGM23_17450) ompA 3539290..3540360 (+) 1071 WP_023289051.1 porin OmpA -
  LGM23_RS17455 (LGM23_17455) matP 3540507..3540959 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  LGM23_RS17460 (LGM23_17460) - 3541145..3542902 (+) 1758 WP_064158137.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22670.34 Da        Isoelectric Point: 10.2333

>NTDB_id=613284 LGM23_RS17435 WP_023289053.1 3537483..3538079(-) (sxy/tfoX) [Klebsiella quasipneumoniae subsp. quasipneumoniae strain SB98]
MRKLVCPRLPQFQACVSPLGQLHSRPLFGGYSLAIEDTVFAMVAEGNIYLKACEQSAAYRVEHHNPLLMLRRHGRIVPLK
YYQIDDALWRDEKQLFRLSLMSWQSAQREKYRRRSSGRLKDLPNISFHMELQLIHSGIPDVLALREVGARQAWLKLRENN
ASLSHNVLLALEGAIVGVHAAALPTPRRQELLEWASAR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=613284 LGM23_RS17435 WP_023289053.1 3537483..3538079(-) (sxy/tfoX) [Klebsiella quasipneumoniae subsp. quasipneumoniae strain SB98]
ATGAGAAAACTCGTATGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCTCCGCTGGGTCAACTTCACTCTCGCCCCCT
GTTTGGCGGCTACAGCCTGGCTATCGAAGATACCGTGTTTGCGATGGTGGCAGAGGGGAATATTTATCTAAAGGCCTGCG
AGCAGAGCGCTGCCTATCGGGTAGAACACCATAATCCTTTATTGATGCTGCGCCGACACGGGCGCATCGTGCCGCTAAAG
TATTATCAAATCGACGATGCCTTGTGGCGCGATGAGAAACAGCTTTTCCGCTTGTCACTGATGTCGTGGCAGAGCGCCCA
GCGTGAAAAATATCGCCGCCGGTCGTCGGGACGCCTGAAGGATTTACCCAATATCAGTTTTCATATGGAATTGCAGCTGA
TTCACTCGGGCATACCAGACGTGTTAGCACTACGGGAGGTGGGCGCCCGCCAGGCCTGGCTAAAGCTGCGCGAGAACAAT
GCTTCCCTATCGCACAACGTCTTGCTGGCGCTGGAGGGGGCTATCGTTGGCGTTCATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTGGAATGGGCGTCTGCGCGCTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(16-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N4W2M8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

49.746

99.495

0.495