Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   NP434_RS02535 Genome accession   NZ_CP101936
Coordinates   483012..483446 (+) Length   144 a.a.
NCBI ID   WP_256683217.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain BGSC 10A5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 478012..488446
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NP434_RS02505 (NP434_02505) ydaD 478659..479519 (+) 861 WP_256683215.1 SDR family oxidoreductase -
  NP434_RS02510 (NP434_02510) lyxE 479535..480038 (+) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  NP434_RS02515 (NP434_02515) ydaF 480126..480677 (+) 552 WP_256683216.1 GNAT family N-acetyltransferase -
  NP434_RS02520 (NP434_02520) ydaG 480755..481177 (+) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  NP434_RS02525 (NP434_02525) amj 481683..482492 (+) 810 WP_003234394.1 lipid II flippase Amj -
  NP434_RS02530 (NP434_02530) ydzA 482537..482827 (-) 291 WP_014478869.1 DUF3817 domain-containing protein -
  NP434_RS02535 (NP434_02535) lrpC 483012..483446 (+) 435 WP_256683217.1 transcriptional regulator LrpC Machinery gene
  NP434_RS02540 (NP434_02540) topB 483511..485694 (+) 2184 WP_041336817.1 DNA topoisomerase III -
  NP434_RS02545 (NP434_02545) ephJ 485897..486985 (+) 1089 WP_185184436.1 glycosyl hydrolase family 8 -
  NP434_RS02550 (NP434_02550) epsK 486966..487817 (+) 852 WP_256683218.1 cyclic-di-GMP receptor EpsK -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16492.11 Da        Isoelectric Point: 7.7037

>NTDB_id=613284 NP434_RS02535 WP_256683217.1 483012..483446(+) (lrpC) [Bacillus subtilis subsp. subtilis strain BGSC 10A5]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRV

Nucleotide


Download         Length: 435 bp        

>NTDB_id=613284 NP434_RS02535 WP_256683217.1 483012..483446(+) (lrpC) [Bacillus subtilis subsp. subtilis strain BGSC 10A5]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCACCATCTGTAACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTGGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGTTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

99.306

0.993