Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LGM24_RS17080 Genome accession   NZ_CP084789
Coordinates   3442155..3442751 (-) Length   198 a.a.
NCBI ID   WP_023289053.1    Uniprot ID   A0A2N4W2M8
Organism   Klebsiella quasipneumoniae subsp. quasipneumoniae strain U41     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3437155..3447751
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LGM24_RS17065 (LGM24_17065) helD 3437366..3439420 (-) 2055 WP_065881814.1 DNA helicase IV -
  LGM24_RS17070 (LGM24_17070) - 3439545..3439991 (+) 447 WP_004201437.1 YccF domain-containing protein -
  LGM24_RS17075 (LGM24_17075) yccS 3440009..3442144 (+) 2136 WP_023289054.1 YccS family putative transporter -
  LGM24_RS17080 (LGM24_17080) sxy/tfoX 3442155..3442751 (-) 597 WP_023289053.1 TfoX/Sxy family DNA transformation protein Regulator
  LGM24_RS17085 (LGM24_17085) - 3442769..3443074 (-) 306 WP_156835198.1 hypothetical protein -
  LGM24_RS17090 (LGM24_17090) sulA 3443100..3443609 (+) 510 WP_065881816.1 SOS-induced cell division inhibitor SulA -
  LGM24_RS17095 (LGM24_17095) ompA 3443962..3445032 (+) 1071 WP_044521956.1 porin OmpA -
  LGM24_RS17100 (LGM24_17100) matP 3445179..3445631 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  LGM24_RS17105 (LGM24_17105) - 3445817..3447574 (+) 1758 WP_065881818.1 AAA family ATPase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22670.34 Da        Isoelectric Point: 10.2333

>NTDB_id=613260 LGM24_RS17080 WP_023289053.1 3442155..3442751(-) (sxy/tfoX) [Klebsiella quasipneumoniae subsp. quasipneumoniae strain U41]
MRKLVCPRLPQFQACVSPLGQLHSRPLFGGYSLAIEDTVFAMVAEGNIYLKACEQSAAYRVEHHNPLLMLRRHGRIVPLK
YYQIDDALWRDEKQLFRLSLMSWQSAQREKYRRRSSGRLKDLPNISFHMELQLIHSGIPDVLALREVGARQAWLKLRENN
ASLSHNVLLALEGAIVGVHAAALPTPRRQELLEWASAR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=613260 LGM24_RS17080 WP_023289053.1 3442155..3442751(-) (sxy/tfoX) [Klebsiella quasipneumoniae subsp. quasipneumoniae strain U41]
ATGAGAAAACTCGTATGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCTCCGCTGGGTCAACTTCACTCTCGCCCCCT
GTTTGGCGGCTACAGCCTTGCTATCGAAGATACCGTGTTTGCGATGGTGGCAGAGGGGAATATTTATCTAAAGGCCTGCG
AGCAGAGCGCTGCCTATCGGGTAGAACACCATAATCCTTTATTGATGCTGCGCCGACACGGGCGCATCGTGCCGCTAAAG
TATTATCAAATCGACGATGCCTTGTGGCGCGATGAGAAACAGCTATTCCGCTTGTCGCTGATGTCGTGGCAGAGCGCCCA
GCGTGAAAAATATCGCCGCCGGTCGTCGGGACGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACTCGGGCATTCCAGATGTGTTAGCACTACGGGAGGTGGGTGCCCGCCAGGCCTGGCTAAAGCTGCGCGAGAACAAT
GCTTCCCTTTCGCACAACGTCTTGCTGGCGCTGGAGGGGGCTATTGTTGGCGTTCATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTGGAATGGGCGTCTGCGCGCTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(16-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N4W2M8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

49.746

99.495

0.495