Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Regulator
Locus tag   NP436_RS16240 Genome accession   NZ_CP101932
Coordinates   3023792..3024667 (-) Length   291 a.a.
NCBI ID   WP_131121720.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. natto strain BGSC 27E1     
Function   modification of ComX; production of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 3018792..3029667
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NP436_RS16220 (NP436_16220) - 3020050..3021297 (+) 1248 WP_031600262.1 IS256-like element ISBsu2 family transposase -
  NP436_RS16225 (NP436_16225) - 3021289..3022143 (-) 855 WP_256682815.1 hypothetical protein -
  NP436_RS16230 (NP436_16230) comX 3022159..3022380 (-) 222 WP_014480704.1 competence pheromone ComX -
  NP436_RS16235 (NP436_16235) - 3022538..3023669 (+) 1132 Protein_3129 IS4-like element IS4Bsu1 family transposase -
  NP436_RS16240 (NP436_16240) comQ 3023792..3024667 (-) 876 WP_131121720.1 polyprenyl synthetase family protein Regulator
  NP436_RS16245 (NP436_16245) degQ 3024852..3024992 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  NP436_RS16250 (NP436_16250) - 3025214..3025339 (+) 126 WP_003228793.1 hypothetical protein -
  NP436_RS16255 (NP436_16255) - 3025453..3025821 (+) 369 WP_014477834.1 hypothetical protein -
  NP436_RS16260 (NP436_16260) pdeH 3025797..3027026 (-) 1230 WP_014480707.1 cyclic di-GMP phosphodiesterase -
  NP436_RS16265 (NP436_16265) pncB 3027162..3028634 (-) 1473 WP_014480708.1 nicotinate phosphoribosyltransferase -
  NP436_RS16270 (NP436_16270) pncA 3028650..3029201 (-) 552 WP_014480709.1 cysteine hydrolase family protein -

Sequence

Protein


Download         Length: 291 a.a.        Molecular weight: 33395.22 Da        Isoelectric Point: 5.4072

>NTDB_id=613232 NP436_RS16240 WP_131121720.1 3023792..3024667(-) (comQ) [Bacillus subtilis subsp. natto strain BGSC 27E1]
MKEIVDENILNEDLKVKLISFIKEKKQFSFAELAYYHYIAFDGKNDKAIELLASGIELLILSADIFDDIEDKDNLQASWM
KLDPSIATNAATALYTLSLQVIGSVSNHPKLLSLTLQYSLQSLQGQHVDLNLTASSESEYIEMIKLKSGSLVTLPSILGV
YLATGEYNETVEEYSRYLGIVEQIANDHYGLYYPNYNDFKTRHTLAFNYLKNKFNQSSIDLLNFYAQENHMINNLEDLKG
KLRESGVIQYLNVIKNLAVENFKESFKKLRLDEQRKNKLLIQLLTLVLHKF

Nucleotide


Download         Length: 876 bp        

>NTDB_id=613232 NP436_RS16240 WP_131121720.1 3023792..3024667(-) (comQ) [Bacillus subtilis subsp. natto strain BGSC 27E1]
ATGAAGGAGATTGTGGATGAAAATATTTTAAATGAGGACTTAAAAGTGAAGCTCATTTCTTTTATCAAAGAAAAAAAACA
ATTTTCATTTGCAGAACTGGCTTATTACCATTACATAGCATTTGATGGAAAAAACGACAAAGCAATTGAGTTATTGGCGT
CAGGTATAGAACTTTTAATTTTATCTGCGGACATTTTTGACGATATTGAGGATAAGGACAATCTTCAGGCTTCTTGGATG
AAATTAGATCCTTCTATAGCAACTAACGCAGCTACCGCACTTTATACATTAAGTCTGCAAGTAATAGGTTCAGTCTCAAA
TCATCCAAAACTTTTAAGCCTTACTTTGCAATATTCACTCCAATCTTTACAAGGACAACATGTAGATTTGAATTTAACAG
CCTCATCAGAATCAGAGTATATTGAAATGATTAAACTTAAGTCGGGTTCTCTGGTAACATTGCCCAGTATTCTTGGTGTA
TATCTGGCAACTGGAGAATATAATGAAACAGTTGAGGAGTATTCACGTTATTTAGGTATAGTCGAGCAAATTGCAAATGA
TCACTATGGACTTTATTACCCTAACTATAATGACTTCAAAACTAGACATACGCTTGCCTTCAATTATCTTAAAAATAAAT
TTAACCAATCATCAATTGACTTATTAAATTTTTATGCGCAAGAAAATCATATGATAAATAATTTGGAAGATTTGAAGGGA
AAGTTAAGAGAATCAGGTGTAATACAATATTTGAATGTTATAAAAAATTTAGCAGTGGAAAATTTTAAGGAATCATTCAA
AAAACTGAGATTAGATGAACAAAGAAAAAATAAATTACTTATTCAATTATTAACACTAGTGTTGCATAAATTTTGA

Domains

Predicted by InterProScan.

Polyprenyl synthetase (polyprenyl_synt)

(45-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Bacillus subtilis subsp. subtilis str. 168

45

96.22

0.433