Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LGM26_RS08430 Genome accession   NZ_CP084783
Coordinates   1799467..1800063 (+) Length   198 a.a.
NCBI ID   WP_048323585.1    Uniprot ID   -
Organism   Klebsiella quasipneumoniae subsp. similipneumoniae strain 09A323     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1794467..1805063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LGM26_RS08405 (LGM26_08405) - 1794552..1796309 (-) 1758 WP_017899459.1 Lon protease family protein -
  LGM26_RS08410 (LGM26_08410) matP 1796495..1796947 (+) 453 WP_002898404.1 macrodomain Ter protein MatP -
  LGM26_RS08415 (LGM26_08415) ompA 1797186..1798256 (-) 1071 WP_004201430.1 porin OmpA -
  LGM26_RS08420 (LGM26_08420) sulA 1798609..1799118 (-) 510 WP_017899460.1 SOS-induced cell division inhibitor SulA -
  LGM26_RS08425 (LGM26_08425) - 1799144..1799449 (+) 306 WP_153351982.1 hypothetical protein -
  LGM26_RS08430 (LGM26_08430) sxy/tfoX 1799467..1800063 (+) 597 WP_048323585.1 TfoX/Sxy family DNA transformation protein Regulator
  LGM26_RS08435 (LGM26_08435) yccS 1800074..1802209 (-) 2136 WP_069603878.1 YccS family putative transporter -
  LGM26_RS08440 (LGM26_08440) - 1802227..1802673 (-) 447 WP_004201437.1 YccF domain-containing protein -
  LGM26_RS08445 (LGM26_08445) helD 1802798..1804852 (+) 2055 WP_017899462.1 DNA helicase IV -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22579.34 Da        Isoelectric Point: 10.2936

>NTDB_id=613229 LGM26_RS08430 WP_048323585.1 1799467..1800063(+) (sxy/tfoX) [Klebsiella quasipneumoniae subsp. similipneumoniae strain 09A323]
MKKLVCPRLPQFQACVSPLGQLHSRPLFGGYSLAIEDTVFAMVAEGNIYLKACEQSAAYRVEHHNPLLMLRRHGRIVPLK
YYQIDDALWRDEKQLFRLSLMSWQSAQREKCRRRSSARLKDLPNISFHMELQLIHSGIPDVLALRQVGARQAWLKLRENN
ASLSHNVLLALEGAIVGVHAAALPTPRRQELLEWAAAR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=613229 LGM26_RS08430 WP_048323585.1 1799467..1800063(+) (sxy/tfoX) [Klebsiella quasipneumoniae subsp. similipneumoniae strain 09A323]
ATGAAAAAACTTGTATGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTTCACTCTCGCCCCCT
GTTTGGCGGCTACAGCCTGGCTATCGAAGATACCGTGTTTGCGATGGTGGCAGAGGGAAATATTTATCTGAAAGCCTGCG
AGCAGAGCGCTGCCTATCGGGTAGAACACCATAATCCTTTATTGATGTTGCGCCGACATGGGCGCATCGTGCCGCTGAAG
TATTATCAAATTGACGATGCCTTGTGGCGCGATGAGAAACAGCTTTTCCGCTTATCGCTGATGTCGTGGCAGAGCGCCCA
GCGTGAAAAATGTCGCCGCCGGTCGTCGGCACGCCTGAAGGATTTACCTAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACTCGGGCATACCAGACGTGTTAGCACTACGGCAGGTGGGCGCCCGCCAGGCCTGGCTAAAGCTGCGTGAGAACAAT
GCTTCCCTATCACACAACGTCTTGCTGGCGCTGGAGGGGGCTATCGTTGGCGTCCATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTGGAATGGGCGGCTGCCCGCTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

50.769

98.485

0.5