Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LGM27_RS15905 Genome accession   NZ_CP084779
Coordinates   3235386..3235982 (-) Length   198 a.a.
NCBI ID   WP_004201433.1    Uniprot ID   -
Organism   Klebsiella quasipneumoniae subsp. similipneumoniae strain 12A476     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3230386..3240982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LGM27_RS15890 (LGM27_15890) helD 3230597..3232651 (-) 2055 WP_004201438.1 DNA helicase IV -
  LGM27_RS15895 (LGM27_15895) - 3232776..3233222 (+) 447 WP_004201437.1 YccF domain-containing protein -
  LGM27_RS15900 (LGM27_15900) yccS 3233240..3235375 (+) 2136 WP_069603878.1 YccS family putative transporter -
  LGM27_RS15905 (LGM27_15905) sxy/tfoX 3235386..3235982 (-) 597 WP_004201433.1 TfoX/Sxy family DNA transformation protein Regulator
  LGM27_RS15910 (LGM27_15910) - 3236000..3236305 (-) 306 WP_158238036.1 hypothetical protein -
  LGM27_RS15915 (LGM27_15915) sulA 3236331..3236840 (+) 510 WP_017899460.1 SOS-induced cell division inhibitor SulA -
  LGM27_RS15920 (LGM27_15920) ompA 3237193..3238263 (+) 1071 WP_004201430.1 porin OmpA -
  LGM27_RS15925 (LGM27_15925) matP 3238453..3238905 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  LGM27_RS15930 (LGM27_15930) - 3239091..3240848 (+) 1758 WP_136073517.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22566.29 Da        Isoelectric Point: 10.1333

>NTDB_id=613212 LGM27_RS15905 WP_004201433.1 3235386..3235982(-) (sxy/tfoX) [Klebsiella quasipneumoniae subsp. similipneumoniae strain 12A476]
MKKLVCPRLPQFQACVSPLGQLHSRPLFGGYSLAIEDTVFAMVAEGNIYLKACEQSAAYRVEHHNPLLMLRRHGRIVPLK
YYQIDDALWRDEKQLFRLSLMSWQSAQREKCRRRSSGRLKDLPNISFHMELQLIHSGIPDVLALREVGARQAWLKLRENN
ASLSHNVLLALEGAIVGVHAAALPTPRRQELLEWAAAR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=613212 LGM27_RS15905 WP_004201433.1 3235386..3235982(-) (sxy/tfoX) [Klebsiella quasipneumoniae subsp. similipneumoniae strain 12A476]
ATGAAAAAACTTGTATGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTTCATTCTCGCCCCCT
GTTTGGCGGCTACAGCCTGGCTATCGAAGATACCGTGTTTGCGATGGTGGCAGAGGGAAATATTTATCTGAAAGCCTGCG
AGCAGAGCGCTGCCTATCGGGTAGAACACCATAATCCTTTATTGATGCTGCGCCGACATGGGCGCATCGTGCCGCTAAAG
TATTATCAAATTGACGATGCCTTGTGGCGCGATGAGAAACAGCTTTTCCGCTTATCGCTGATGTCGTGGCAGAGCGCCCA
GCGTGAAAAATGTCGCCGCCGGTCGTCGGGACGCCTGAAGGATTTACCTAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACTCGGGCATACCCGATGTGTTAGCACTACGGGAGGTGGGCGCCCGCCAGGCCTGGCTAAAGCTGCGTGAGAATAAT
GCTTCCCTATCACACAACGTCTTGCTGGCGCTGGAGGGGGCTATCGTTGGCGTTCACGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTGGAATGGGCGGCTGCCCGCTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(16-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

50.769

98.485

0.5