Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   NP436_RS10085 Genome accession   NZ_CP101932
Coordinates   1899794..1900411 (-) Length   205 a.a.
NCBI ID   WP_003238209.1    Uniprot ID   G4NVV3
Organism   Bacillus subtilis subsp. natto strain BGSC 27E1     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1894794..1905411
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NP436_RS10055 (NP436_10055) yndJ 1895113..1896753 (+) 1641 WP_014479931.1 YndJ family protein -
  NP436_RS10060 (NP436_10060) - 1896843..1897157 (+) 315 Protein_1928 hypothetical protein -
  NP436_RS10065 (NP436_10065) pghL 1897382..1898140 (+) 759 WP_014479934.1 gamma-polyglutamate hydrolase PghL -
  NP436_RS10070 (NP436_10070) - 1898167..1898616 (-) 450 WP_014479935.1 YndM family protein -
  NP436_RS10075 (NP436_10075) fosM 1898825..1899244 (+) 420 WP_014479937.1 FosM family fosfomycin resistance protein -
  NP436_RS10080 (NP436_10080) - 1899168..1899507 (+) 340 Protein_1932 hypothetical protein -
  NP436_RS10085 (NP436_10085) dinR/lexA 1899794..1900411 (-) 618 WP_003238209.1 transcriptional repressor LexA Regulator
  NP436_RS10090 (NP436_10090) yneA 1900561..1900878 (+) 318 WP_003231598.1 cell division suppressor protein YneA -
  NP436_RS10095 (NP436_10095) dinL 1900897..1901550 (+) 654 WP_014479938.1 recombinase family protein -
  NP436_RS10100 (NP436_10100) ynzC 1901614..1901847 (+) 234 WP_003231595.1 DUF896 domain-containing protein -
  NP436_RS10105 (NP436_10105) recP/tkt 1902016..1904019 (+) 2004 WP_014476936.1 transketolase Machinery gene
  NP436_RS10110 (NP436_10110) sirA 1904172..1904618 (+) 447 WP_003231591.1 sporulation inhibitor of replication protein SirA -
  NP436_RS10115 (NP436_10115) yneF 1904704..1904922 (+) 219 WP_003221221.1 YneF family protein -
  NP436_RS10120 (NP436_10120) ynzD 1904996..1905169 (-) 174 WP_010886518.1 aspartyl-phosphate phosphatase YnzD -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 22849.36 Da        Isoelectric Point: 5.1450

>NTDB_id=613188 NP436_RS10085 WP_003238209.1 1899794..1900411(-) (dinR/lexA) [Bacillus subtilis subsp. natto strain BGSC 27E1]
MTKLSKRQLDILRFIKAEVKSKGYPPSVREIGEAVGLASSSTVHGHLARLETKGLIRRDPTKPRAIEILDEEVDIPQSQV
VNVPVIGKVTAGSPITAVENIEEYFPLPDRMVPPDEHVFMLEIMGDSMIDAGILDKDYVIVKQQNTANNGEIVVAMTEDD
EATVKRFYKEDTHIRLQPENPTMEPIILQNVSILGKVIGVFRTVH

Nucleotide


Download         Length: 618 bp        

>NTDB_id=613188 NP436_RS10085 WP_003238209.1 1899794..1900411(-) (dinR/lexA) [Bacillus subtilis subsp. natto strain BGSC 27E1]
ATGACGAAGCTATCAAAAAGGCAACTTGATATCCTCCGTTTTATTAAAGCAGAGGTTAAATCAAAAGGATATCCGCCTTC
CGTGAGAGAGATCGGAGAGGCTGTCGGGCTTGCGTCCAGCTCTACTGTCCACGGCCATTTGGCCCGCTTGGAAACAAAAG
GGCTGATCAGACGAGATCCGACAAAACCAAGAGCAATAGAAATTCTTGATGAAGAAGTAGACATTCCGCAAAGCCAGGTC
GTTAATGTACCGGTCATCGGGAAAGTCACGGCGGGATCTCCTATTACAGCAGTAGAAAATATTGAAGAATATTTTCCGCT
CCCAGACCGCATGGTTCCTCCAGACGAGCATGTATTTATGCTGGAGATTATGGGAGACAGTATGATAGATGCTGGTATTC
TCGATAAGGACTATGTCATCGTTAAACAGCAAAACACAGCGAACAATGGGGAAATTGTAGTTGCAATGACAGAAGATGAT
GAAGCAACTGTAAAACGATTCTATAAAGAGGATACCCACATTCGCTTGCAGCCTGAGAACCCAACGATGGAACCTATCAT
TTTGCAGAATGTCAGCATTCTAGGGAAAGTGATTGGCGTGTTCAGAACCGTCCATTAA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(1-65)

Peptidase S24-like (Peptidase_S24)

(84-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVV3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

100

100

1