Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LGM28_RS16415 Genome accession   NZ_CP084777
Coordinates   3334293..3334889 (-) Length   198 a.a.
NCBI ID   WP_004201433.1    Uniprot ID   -
Organism   Klebsiella quasipneumoniae subsp. similipneumoniae strain CIP110288     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3329293..3339889
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LGM28_RS16400 (LGM28_16400) helD 3329504..3331558 (-) 2055 WP_004201438.1 DNA helicase IV -
  LGM28_RS16405 (LGM28_16405) - 3331683..3332129 (+) 447 WP_004201437.1 YccF domain-containing protein -
  LGM28_RS16410 (LGM28_16410) yccS 3332147..3334282 (+) 2136 WP_136084580.1 YccS family putative transporter -
  LGM28_RS16415 (LGM28_16415) sxy/tfoX 3334293..3334889 (-) 597 WP_004201433.1 TfoX/Sxy family DNA transformation protein Regulator
  LGM28_RS16420 (LGM28_16420) - 3334907..3335212 (-) 306 WP_153650437.1 hypothetical protein -
  LGM28_RS16425 (LGM28_16425) sulA 3335238..3335747 (+) 510 WP_004201431.1 SOS-induced cell division inhibitor SulA -
  LGM28_RS16430 (LGM28_16430) ompA 3336100..3337170 (+) 1071 WP_004201430.1 porin OmpA -
  LGM28_RS16435 (LGM28_16435) matP 3337381..3337833 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  LGM28_RS16440 (LGM28_16440) - 3338019..3339776 (+) 1758 WP_004201429.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22566.29 Da        Isoelectric Point: 10.1333

>NTDB_id=613188 LGM28_RS16415 WP_004201433.1 3334293..3334889(-) (sxy/tfoX) [Klebsiella quasipneumoniae subsp. similipneumoniae strain CIP110288]
MKKLVCPRLPQFQACVSPLGQLHSRPLFGGYSLAIEDTVFAMVAEGNIYLKACEQSAAYRVEHHNPLLMLRRHGRIVPLK
YYQIDDALWRDEKQLFRLSLMSWQSAQREKCRRRSSGRLKDLPNISFHMELQLIHSGIPDVLALREVGARQAWLKLRENN
ASLSHNVLLALEGAIVGVHAAALPTPRRQELLEWAAAR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=613188 LGM28_RS16415 WP_004201433.1 3334293..3334889(-) (sxy/tfoX) [Klebsiella quasipneumoniae subsp. similipneumoniae strain CIP110288]
ATGAAAAAACTTGTATGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTTCATTCTCGCCCCCT
GTTTGGCGGCTACAGCCTGGCTATCGAAGATACCGTGTTTGCGATGGTGGCAGAGGGAAATATTTATCTGAAAGCCTGCG
AGCAGAGCGCTGCCTATCGGGTAGAACACCATAATCCTTTATTGATGCTGCGCCGACATGGGCGCATCGTGCCGCTAAAG
TATTATCAAATTGACGATGCCTTGTGGCGCGATGAGAAACAGCTTTTCCGCTTATCGCTGATGTCGTGGCAGAGCGCCCA
GCGTGAAAAATGTCGCCGCCGGTCGTCGGGACGCCTGAAGGATTTACCTAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACTCGGGCATACCCGATGTGTTAGCACTACGGGAGGTGGGCGCCCGCCAGGCCTGGCTAAAGCTGCGTGAGAACAAT
GCTTCCCTATCACACAACGTCTTGCTGGCGCTGGAGGGGGCTATCGTTGGCGTCCATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTGGAATGGGCGGCTGCCCGCTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(16-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

50.769

98.485

0.5