Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   NP436_RS07995 Genome accession   NZ_CP101932
Coordinates   1508469..1509044 (+) Length   191 a.a.
NCBI ID   WP_003232378.1    Uniprot ID   O34857
Organism   Bacillus subtilis subsp. natto strain BGSC 27E1     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1503469..1514044
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NP436_RS07965 (NP436_07965) dapD 1503657..1504367 (+) 711 WP_003218680.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  NP436_RS07970 (NP436_07970) dapI 1504437..1505561 (+) 1125 WP_014476668.1 N-acetyldiaminopimelate deacetylase -
  NP436_RS07975 (NP436_07975) ykuS 1505623..1505868 (+) 246 WP_003232382.1 YkuS family protein -
  NP436_RS07980 (NP436_07980) mscT 1505905..1506708 (-) 804 WP_003244994.1 small-conductance mechanosensitive channel protein MscT -
  NP436_RS07985 (NP436_07985) ahpA 1506945..1507487 (+) 543 WP_003245371.1 biofilm-specific peroxidase AhpA -
  NP436_RS07990 (NP436_07990) ykuV 1507557..1508003 (+) 447 WP_014479665.1 thiol-disulfide oxidoreductase YkuV -
  NP436_RS07995 (NP436_07995) rok 1508469..1509044 (+) 576 WP_003232378.1 transcriptional regulator Rok Regulator
  NP436_RS08005 (NP436_08005) cse15 1510375..1511340 (-) 966 WP_014479669.1 spore protein Cse15 -
  NP436_RS08010 (NP436_08010) mobA 1511477..1512076 (+) 600 WP_014479670.1 molybdenum cofactor guanylyltransferase -
  NP436_RS08015 (NP436_08015) moeB 1512127..1513146 (+) 1020 WP_014479671.1 molybdopterin-synthase adenylyltransferase MoeB -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21839.85 Da        Isoelectric Point: 9.8633

>NTDB_id=613171 NP436_RS07995 WP_003232378.1 1508469..1509044(+) (rok) [Bacillus subtilis subsp. natto strain BGSC 27E1]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDRNGSPSEIKKDFRSEKKPDSLPVLAELAAQEIRSYQPQS
QQQSVQPQLQSISSLPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFMQ
SLIKMYPEVKKPYRGQYILEGEIESAESANE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=613171 NP436_RS07995 WP_003232378.1 1508469..1509044(+) (rok) [Bacillus subtilis subsp. natto strain BGSC 27E1]
ATGTTTAATGAAAGAGAAGCTTTGCGCTTGCGGTTAGAACAATTAAATGAAGCTGAAGTGAAAGTCATTCGTGAATATCA
AATTGAACGTGATAAAATATACGCAAAATTAAGAGAGCTGGACAGAAATGGAAGCCCTTCCGAAATCAAAAAGGATTTCC
GTTCTGAAAAAAAACCTGACTCTCTGCCGGTTCTCGCTGAGCTTGCGGCTCAGGAAATCAGAAGCTATCAGCCGCAATCA
CAGCAGCAGTCTGTTCAGCCTCAGCTTCAATCTATTTCCTCTCTTCCTGCCGGTATACCAGACGGAACAACACGAAGAAG
AAGAGGAACGGCAAGACCGGGATCAAAAGCAGCTAAGCTGCGTGAAGCTGCTATTAAAACATTAAAACGCCACAACGCGG
CGATTAAGAGCTCGGAGCTTCAAAAAGAGATTGAAAAAGAAAGCGGTCTTGAAATCCCTAATATGACAACATTTATGCAA
AGCTTAATTAAAATGTACCCGGAAGTGAAAAAGCCATATCGCGGGCAGTACATTTTAGAGGGTGAAATCGAATCTGCAGA
ATCAGCAAATGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5ZUX
  PDB 5ZUZ

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

100

100

1