Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   NP436_RS07550 Genome accession   NZ_CP101932
Coordinates   1427099..1428235 (-) Length   378 a.a.
NCBI ID   WP_015252291.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. natto strain BGSC 27E1     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1422099..1433235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NP436_RS07510 (NP436_07510) xre 1422443..1422784 (+) 342 WP_003232719.1 HTH-type transcriptional regulator Xre -
  NP436_RS07515 (NP436_07515) xkdA 1422947..1423543 (+) 597 WP_003232721.1 ImmA/IrrE family metallo-endopeptidase -
  NP436_RS07520 (NP436_07520) xpdC 1423587..1424423 (-) 837 WP_003245071.1 manganese catalase family protein -
  NP436_RS07525 (NP436_07525) pghB 1424500..1425102 (-) 603 WP_014479547.1 poly-gamma-glutamate hydrolase family protein -
  NP436_RS07530 (NP436_07530) yjqA 1425207..1425584 (+) 378 WP_014479546.1 PH domain-containing protein -
  NP436_RS07535 (NP436_07535) xlyB 1425624..1426577 (-) 954 WP_014479545.1 N-acetylmuramoyl-L-alanine amidase -
  NP436_RS07540 (NP436_07540) yjpA 1426698..1426944 (+) 247 Protein_1422 YciI family protein -
  NP436_RS07545 (NP436_07545) phrA 1426975..1427109 (-) 135 WP_003245487.1 phosphatase RapA inhibitor PhrA -
  NP436_RS07550 (NP436_07550) rapC 1427099..1428235 (-) 1137 WP_015252291.1 response regulator aspartate phosphatase RapA Regulator
  NP436_RS07555 (NP436_07555) - 1428380..1428553 (-) 174 Protein_1425 ATPase -
  NP436_RS07560 (NP436_07560) - 1428648..1429798 (+) 1151 WP_087614160.1 IS3 family transposase -
  NP436_RS07565 (NP436_07565) yjoB 1429840..1430940 (-) 1101 Protein_1427 ATPase YjoB -
  NP436_RS07570 (NP436_07570) bstD 1431089..1431553 (+) 465 WP_014479541.1 DinB family protein -
  NP436_RS07575 (NP436_07575) yjnA 1431772..1432536 (+) 765 WP_014476525.1 sulfite exporter TauE/SafE family protein -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 45046.23 Da        Isoelectric Point: 4.7218

>NTDB_id=613169 NP436_RS07550 WP_015252291.1 1427099..1428235(-) (rapC) [Bacillus subtilis subsp. natto strain BGSC 27E1]
MRMKQTIPSSYVGLKINEWYTHIRQFHVAEAERVKLEVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPFGEDTSQLE
FSELLEDIEGNQYKLTGLLEYYFNFFRGMYEFKQKMFVSAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQMYETYTVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKKEGNPRLISSALYNLGNCYEKMGELQK
AAEYFEKSVSICKSEKFDNLPHSIYSLTQVLYKQKNDAEAQKKYREGLEIARQYSDELFVELFQFLHALYGKNIDTESVS
HTFQFLEEHMLYPYIEELAHDAAQFYIENGQPEKALSFYEKMVHAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=613169 NP436_RS07550 WP_015252291.1 1427099..1428235(-) (rapC) [Bacillus subtilis subsp. natto strain BGSC 27E1]
TTGAGGATGAAGCAGACGATTCCGTCCTCTTATGTCGGGCTTAAAATTAATGAATGGTATACTCATATCCGGCAGTTCCA
CGTCGCTGAAGCCGAACGGGTCAAGCTCGAAGTAGAAAGAGAAATTGAGGATATGGAAGAAGACCAAGATTTGCTGCTGT
ATTATTCTTTAATGGAGTTCAGGCATCGTGTCATGCTGGATTACATTAAGCCTTTTGGAGAGGACACGTCGCAGCTAGAG
TTTTCAGAATTATTAGAAGACATCGAAGGGAATCAGTACAAGCTGACAGGGCTTCTCGAATATTACTTTAATTTTTTTCG
AGGAATGTATGAATTTAAGCAGAAGATGTTTGTCAGTGCCATGATGTATTATAAACGGGCAGAAAAGAATCTTGCCCTCG
TCTCGGATGATATTGAGAAAGCCGAGTTTGCTTTTAAAATGGCTGAGATTTTTTACAATTTAAAACAAACCTATGTTTCG
ATGAGCTACGCCGTTCAGGCATTAGAAACATACCAAATGTATGAAACGTACACCGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGTAATTATGATGATATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTGGCTTTAGATCTTGCAAAGA
AGGAAGGCAATCCCCGCCTGATCAGTTCCGCCCTATATAATCTCGGAAACTGCTATGAGAAAATGGGTGAACTGCAAAAG
GCAGCCGAATACTTTGAGAAATCTGTTTCTATTTGCAAGTCGGAAAAGTTCGATAATCTTCCGCATTCTATCTACTCTTT
AACACAAGTTCTGTATAAACAAAAAAATGACGCCGAAGCGCAAAAAAAGTATCGTGAAGGATTGGAAATCGCCCGTCAAT
ACAGTGATGAATTATTCGTGGAGCTTTTTCAATTTTTACATGCGTTATACGGAAAAAACATTGACACAGAATCGGTCTCA
CACACCTTTCAATTTCTTGAAGAACATATGCTGTATCCTTATATTGAAGAGCTGGCGCATGATGCTGCCCAATTCTATAT
AGAAAACGGACAGCCCGAAAAAGCACTTTCATTTTATGAGAAAATGGTGCACGCACAAAAACAAATCCAGAGAGGAGATT
GTTTATATGAAATCTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-67)

Tetratricopeptide repeat (TPR_12)

(221-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.947

99.471

0.447
  rapF Bacillus subtilis subsp. subtilis str. 168

41.689

100

0.418