Detailed information NTG0061316

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: B7R44_RS06150
• Genome accession: NZ_AP019189
• Coordinates: 1119916..1120908 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain M217
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1114916..1125908

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
B7R44_RS06120 (MYEC217_10560)	ispD	1114977..1115687 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
B7R44_RS06125 (MYEC217_10570)	ispF	1115687..1116166 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
B7R44_RS06130 (MYEC217_10580)	truD	1116163..1117212 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
B7R44_RS06135 (MYEC217_10590)	surE	1117193..1117954 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
B7R44_RS06140 (MYEC217_10600)	pcm	1117948..1118574 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
B7R44_RS06145 (MYEC217_10610)	nlpD	1118759..1119853 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
B7R44_RS06150 (MYEC217_10620)	rpoS	1119916..1120908 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
B7R44_RS06155 (MYEC217_10630)	ygbN	1121002..1122366 (-)	1365	WP_000104441.1	GntP family transporter	-
B7R44_RS06160 (MYEC217_10640)	ygbM	1122455..1123231 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
B7R44_RS06165 (MYEC217_10650)	ygbL	1123236..1123874 (-)	639	WP_001278994.1	aldolase	-
B7R44_RS06170 (MYEC217_10660)	otnK	1123871..1125133 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=61316 B7R44_RS06150 WP_000081550.1 1119916..1120908(+) (rpoS) [Escherichia coli strain M217]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=61316 B7R44_RS06150 WP_000081550.1 1119916..1120908(+) (rpoS) [Escherichia coli strain M217]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715