Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LGN97_RS10600 Genome accession   NZ_CP084767
Coordinates   2260570..2261166 (+) Length   198 a.a.
NCBI ID   WP_074386392.1    Uniprot ID   -
Organism   Klebsiella variicola subsp. tropica strain CDC4241-71     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2255570..2266166
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LGN97_RS10580 (LGN97_10580) - 2255802..2257559 (-) 1758 WP_061155155.1 Lon protease family protein -
  LGN97_RS10585 (LGN97_10585) matP 2257745..2258197 (+) 453 WP_008805891.1 macrodomain Ter protein MatP -
  LGN97_RS10590 (LGN97_10590) ompA 2258305..2259357 (-) 1053 WP_008805892.1 porin OmpA -
  LGN97_RS10595 (LGN97_10595) sulA 2259710..2260219 (-) 510 WP_074386393.1 SOS-induced cell division inhibitor SulA -
  LGN97_RS10600 (LGN97_10600) sxy/tfoX 2260570..2261166 (+) 597 WP_074386392.1 TfoX/Sxy family DNA transformation protein Regulator
  LGN97_RS10605 (LGN97_10605) yccS 2261180..2263315 (-) 2136 WP_100631488.1 YccS family putative transporter -
  LGN97_RS10610 (LGN97_10610) - 2263333..2263779 (-) 447 WP_100729781.1 YccF domain-containing protein -
  LGN97_RS10615 (LGN97_10615) helD 2263904..2265958 (+) 2055 WP_100729780.1 DNA helicase IV -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22794.29 Da        Isoelectric Point: 9.6690

>NTDB_id=613136 LGN97_RS10600 WP_074386392.1 2260570..2261166(+) (sxy/tfoX) [Klebsiella variicola subsp. tropica strain CDC4241-71]
MRKLVCPRFPQFQACVSPLGQLYSRPLFGGYSLAIDDTVFAMVAEGDIYLRACEQSAAYRVEHRNPLLTLRRHGRIVPMK
YYQIDEALWRDETQLFRLSLLSWQSAQREKYHRRESGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQQAWQRLRENN
ASLSVNVLLALEGAIVGVHTAALPTLRRQELLEWAGAR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=613136 LGN97_RS10600 WP_074386392.1 2260570..2261166(+) (sxy/tfoX) [Klebsiella variicola subsp. tropica strain CDC4241-71]
ATGAGAAAACTAGTATGTCCGCGGTTCCCGCAATTTCAGGCCTGCGTCTCGCCGCTGGGTCAGTTATATTCTCGTCCGCT
TTTTGGCGGCTATAGCCTGGCCATTGATGATACGGTGTTTGCGATGGTGGCAGAGGGGGATATTTACCTGAGAGCCTGCG
AGCAGAGCGCCGCGTATCGGGTTGAACATCGTAATCCTTTATTAACGCTACGCCGACACGGGCGCATCGTGCCGATGAAG
TATTATCAAATTGACGAGGCATTGTGGCGCGATGAAACACAGCTTTTTCGGCTGTCGCTGCTGTCGTGGCAAAGCGCCCA
GCGTGAAAAGTACCACCGCCGGGAGTCTGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TCCACGCGGGCATACCGGATGTCAGGACGCTTCGGGAGGTAGGCGCTCAGCAGGCCTGGCAACGGCTGCGAGAAAACAAC
GCCTCCCTGTCGGTCAACGTCTTGCTGGCGCTGGAGGGGGCGATTGTCGGCGTTCACACCGCTGCACTCCCGACGCTGCG
GCGTCAGGAGCTGCTCGAATGGGCTGGAGCCCGCTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(16-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51