Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   NP436_RS02425 Genome accession   NZ_CP101932
Coordinates   475951..476385 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis subsp. natto strain BGSC 27E1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 470951..481385
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NP436_RS02395 (NP436_02395) ydaD 471598..472458 (+) 861 WP_014478865.1 SDR family oxidoreductase -
  NP436_RS02400 (NP436_02400) lyxE 472474..472977 (+) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  NP436_RS02405 (NP436_02405) ydaF 473065..473616 (+) 552 WP_014478866.1 GNAT family N-acetyltransferase -
  NP436_RS02410 (NP436_02410) ydaG 473694..474116 (+) 423 WP_014478867.1 pyridoxamine 5'-phosphate oxidase family protein -
  NP436_RS02415 (NP436_02415) amj 474622..475431 (+) 810 WP_014478868.1 lipid II flippase Amj -
  NP436_RS02420 (NP436_02420) ydzA 475476..475766 (-) 291 WP_014478869.1 DUF3817 domain-containing protein -
  NP436_RS02425 (NP436_02425) lrpC 475951..476385 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  NP436_RS02430 (NP436_02430) topB 476450..478633 (+) 2184 WP_014478870.1 DNA topoisomerase III -
  NP436_RS02435 (NP436_02435) mutT 478746..479195 (+) 450 WP_014478871.1 8-oxo-dGTP diphosphatase MutT -
  NP436_RS02440 (NP436_02440) poxB 479262..480986 (+) 1725 WP_014478872.1 pyruvate oxidase -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=613134 NP436_RS02425 WP_003246585.1 475951..476385(+) (lrpC) [Bacillus subtilis subsp. natto strain BGSC 27E1]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=613134 NP436_RS02425 WP_003246585.1 475951..476385(+) (lrpC) [Bacillus subtilis subsp. natto strain BGSC 27E1]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTGACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATTAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTGGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1