Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LGN95_RS17165 Genome accession   NZ_CP084766
Coordinates   3511617..3512213 (-) Length   198 a.a.
NCBI ID   WP_012542296.1    Uniprot ID   A0A1F2LQD1
Organism   Klebsiella variicola subsp. variicola strain 01A065     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3506617..3517213
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LGN95_RS17150 (LGN95_17150) helD 3506825..3508879 (-) 2055 WP_055322984.1 DNA helicase IV -
  LGN95_RS17155 (LGN95_17155) - 3509004..3509450 (+) 447 WP_012542294.1 YccF domain-containing protein -
  LGN95_RS17160 (LGN95_17160) yccS 3509468..3511603 (+) 2136 WP_055322983.1 YccS family putative transporter -
  LGN95_RS17165 (LGN95_17165) sxy/tfoX 3511617..3512213 (-) 597 WP_012542296.1 TfoX/Sxy family DNA transformation protein Regulator
  LGN95_RS17170 (LGN95_17170) sulA 3512564..3513073 (+) 510 WP_008805893.1 SOS-induced cell division inhibitor SulA -
  LGN95_RS17175 (LGN95_17175) ompA 3513426..3514478 (+) 1053 WP_008805892.1 porin OmpA -
  LGN95_RS17180 (LGN95_17180) matP 3514589..3515041 (-) 453 WP_008805891.1 macrodomain Ter protein MatP -
  LGN95_RS17185 (LGN95_17185) - 3515227..3516984 (+) 1758 WP_055323163.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22631.12 Da        Isoelectric Point: 10.0610

>NTDB_id=613118 LGN95_RS17165 WP_012542296.1 3511617..3512213(-) (sxy/tfoX) [Klebsiella variicola subsp. variicola strain 01A065]
MRKLVCPRFPQFQACVSPLGQLHSRPLFGGYSLAIDDTVFAMVAEGDIYLRACEQSAAYRVEHRNPLLTLRRHGRIVPMK
YYQIDDALWRDETQLFRLSLLSWQSAQREKNHRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQQAWQRLRENN
ASLSLNVLLALEGAIVGVHAAALPTLRRQELLEWAGAR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=613118 LGN95_RS17165 WP_012542296.1 3511617..3512213(-) (sxy/tfoX) [Klebsiella variicola subsp. variicola strain 01A065]
ATGAGAAAACTAGTATGTCCGCGGTTCCCGCAATTTCAGGCCTGCGTCTCGCCGCTGGGTCAGTTACATTCTCGTCCGCT
TTTTGGCGGCTATAGCCTGGCCATTGATGATACGGTGTTTGCGATGGTGGCAGAGGGCGATATTTACCTGAGGGCCTGCG
AGCAGAGCGCCGCGTATCGGGTTGAACATCGCAATCCTTTATTAACGCTGCGCCGACATGGGCGCATCGTGCCGATGAAG
TATTATCAAATTGACGACGCATTGTGGCGCGATGAGACTCAGCTTTTTCGGCTGTCGCTGTTGTCGTGGCAGAGTGCGCA
GCGTGAAAAGAACCACCGACGGGCGTCGGGCCGTCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TCCACGCGGGCATACCGGATGTCAGGACGCTTCGGGAGGTAGGCGCTCAGCAGGCCTGGCAACGGCTACGAGAAAACAAC
GCCTCTCTATCGCTCAATGTCTTGCTGGCGCTGGAGGGGGCGATTGTCGGCGTTCACGCCGCCGCGCTCCCGACGCTGCG
GCGTCAGGAGCTGCTCGAATGGGCAGGAGCCCGTTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(16-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1F2LQD1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

50.761

99.495

0.505