Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   NP432_RS12965 Genome accession   NZ_CP101931
Coordinates   2535603..2536730 (-) Length   375 a.a.
NCBI ID   WP_227098813.1    Uniprot ID   -
Organism   Bacillus subtilis strain BGSC b98af     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2530603..2541730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NP432_RS12935 (NP432_12935) - 2531242..2532090 (-) 849 WP_227098811.1 alpha/beta fold hydrolase -
  NP432_RS12940 (NP432_12940) - 2532201..2532776 (-) 576 WP_227098812.1 TetR/AcrR family transcriptional regulator -
  NP432_RS12945 (NP432_12945) - 2532994..2533136 (-) 143 Protein_2506 tryptophan--tRNA ligase -
  NP432_RS12950 (NP432_12950) - 2533322..2534329 (-) 1008 WP_252151680.1 NADP-dependent oxidoreductase -
  NP432_RS12955 (NP432_12955) - 2534337..2534639 (-) 303 Protein_2508 zinc-binding dehydrogenase -
  NP432_RS21060 - 2534682..2534889 (-) 208 Protein_2509 TetR/AcrR family transcriptional regulator -
  NP432_RS12965 (NP432_12965) rapC 2535603..2536730 (-) 1128 WP_227098813.1 Rap family tetratricopeptide repeat protein Regulator
  NP432_RS12970 (NP432_12970) - 2536916..2538682 (+) 1767 WP_256682884.1 T7SS effector LXG polymorphic toxin -
  NP432_RS12975 (NP432_12975) - 2538696..2539160 (+) 465 WP_015251659.1 SMI1/KNR4 family protein -
  NP432_RS12980 (NP432_12980) - 2539363..2540085 (-) 723 WP_181217209.1 NPP1 family protein -
  NP432_RS12985 (NP432_12985) cwlA 2540279..2541099 (-) 821 Protein_2514 N-acetylmuramoyl-L-alanine amidase -
  NP432_RS12990 (NP432_12990) - 2541144..2541284 (-) 141 Protein_2515 phage holin family protein -
  NP432_RS12995 (NP432_12995) - 2541311..2541496 (-) 186 Protein_2516 phage terminase large subunit -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 44080.17 Da        Isoelectric Point: 5.4981

>NTDB_id=613063 NP432_RS12965 WP_227098813.1 2535603..2536730(-) (rapC) [Bacillus subtilis strain BGSC b98af]
MNPVLSSSEVGVKINEWYKMIRQFSVPDAEILKAEVEQEINQMEEDEYLLIYFSLMKFRHQLMLDYLEPVTTRIRPTIDE
LLEKIETSNKGISGLLSYYSLFFRGMYEFDKKQYMNAIYYYREAEKQLIHVPDEIERAEFHFKLAEAYYGMKQSHVSMHH
VKQALDIYNQYELYKVRKVQCMFVISGNYTDFKHYEKSQPHLEKALELSRELNNKRLISSALYNLGTNFADSGDYEQAEV
YIKQAVEITEKEKLTNLPHSLFSYAKILFKQGKMNEAIQVSKKGLSAALYQGDELFAKLQGYLKALYVDAVDQQGVNKTI
EYLEKNKNYSYIEDIACETAAAYANSKEFETSYVYHQKMVETQTQIQRGECLYDF

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=613063 NP432_RS12965 WP_227098813.1 2535603..2536730(-) (rapC) [Bacillus subtilis strain BGSC b98af]
GTGAATCCGGTTTTATCATCGTCAGAAGTTGGCGTAAAGATCAATGAATGGTATAAAATGATACGTCAATTTAGTGTCCC
GGATGCAGAGATTTTAAAGGCTGAGGTGGAGCAAGAGATCAATCAGATGGAGGAAGATGAGTATTTACTTATTTACTTCT
CTCTAATGAAATTCCGTCATCAGCTCATGTTAGATTATTTGGAACCCGTAACAACACGTATAAGACCAACTATTGACGAA
CTTCTTGAAAAAATTGAGACTTCAAATAAAGGCATATCTGGTCTTTTGTCATATTATTCTCTGTTTTTCAGAGGGATGTA
CGAGTTTGATAAGAAGCAATACATGAATGCTATCTACTATTATAGAGAAGCCGAAAAGCAGCTTATACATGTCCCTGATG
AGATCGAAAGGGCAGAGTTTCATTTTAAGTTAGCTGAAGCATATTATGGTATGAAGCAAAGTCATGTGTCTATGCATCAC
GTTAAACAAGCATTGGATATTTATAATCAATATGAACTTTATAAGGTGCGGAAAGTTCAATGTATGTTTGTTATCTCAGG
GAATTATACTGATTTTAAACATTACGAAAAAAGTCAGCCGCATCTTGAAAAGGCATTAGAGTTATCTAGGGAATTGAATA
ACAAAAGGTTGATCAGTTCTGCACTATATAATTTAGGCACTAATTTTGCTGACAGTGGTGATTACGAGCAGGCGGAAGTA
TACATAAAGCAAGCAGTGGAGATTACAGAAAAAGAAAAGCTCACAAACTTGCCACATTCTTTATTTTCTTATGCAAAAAT
CCTTTTTAAACAAGGAAAAATGAATGAGGCTATCCAAGTAAGTAAGAAAGGTTTGTCAGCAGCTCTTTATCAAGGTGATG
AGCTTTTCGCAAAATTACAGGGATATTTAAAAGCTCTTTATGTCGATGCAGTGGACCAACAAGGTGTTAATAAAACAATA
GAATACTTAGAAAAAAATAAGAACTATTCATATATTGAAGACATTGCCTGTGAGACCGCAGCTGCTTATGCAAACTCAAA
AGAATTTGAAACATCTTATGTTTATCATCAGAAAATGGTTGAAACTCAAACACAAATTCAAAGGGGAGAATGTCTGTATG
ACTTTTAA

Domains

Predicted by InterProScan.

Tetratricopeptide repeat (TPR_8)

(259-287)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_12)

(195-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.415

100

0.445
  rapF Bacillus subtilis subsp. subtilis str. 168

39.947

100

0.403