Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LGV34_RS10165 Genome accession   NZ_CP084719
Coordinates   2064963..2066336 (-) Length   457 a.a.
NCBI ID   WP_037572997.1    Uniprot ID   A0AAE5T2R7
Organism   Staphylococcus chromogenes strain 76ME     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2059963..2071336
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LGV34_RS10140 (LGV34_10145) cysE 2060215..2060853 (-) 639 WP_258026740.1 serine O-acetyltransferase -
  LGV34_RS10145 (LGV34_10150) gltX 2061181..2062635 (-) 1455 WP_105965081.1 glutamate--tRNA ligase -
  LGV34_RS10150 (LGV34_10155) ispF 2062712..2063191 (-) 480 WP_037572986.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  LGV34_RS10155 (LGV34_10160) ispD 2063184..2063882 (-) 699 WP_103158776.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  LGV34_RS10160 (LGV34_10165) - 2063882..2064946 (-) 1065 WP_103158777.1 PIN/TRAM domain-containing protein -
  LGV34_RS10165 (LGV34_10170) radA 2064963..2066336 (-) 1374 WP_037572997.1 DNA repair protein RadA Machinery gene
  LGV34_RS10170 (LGV34_10175) - 2066463..2068949 (-) 2487 WP_105962895.1 ATP-dependent Clp protease ATP-binding subunit -
  LGV34_RS10175 (LGV34_10180) - 2068962..2069966 (-) 1005 WP_268216803.1 protein arginine kinase -
  LGV34_RS10180 (LGV34_10185) - 2069950..2070456 (-) 507 WP_411912572.1 UvrB/UvrC motif-containing protein -
  LGV34_RS10185 (LGV34_10190) - 2070501..2070962 (-) 462 WP_037573004.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 50287.91 Da        Isoelectric Point: 7.9984

>NTDB_id=612745 LGV34_RS10165 WP_037572997.1 2064963..2066336(-) (radA) [Staphylococcus chromogenes strain 76ME]
MAKKKVIFECTACGYQSPKWMGKCPNCGAWNSMEESLEQKTAHPKHGVRTQKTTQSKIQTLNEVKNEKTPRILTNSQEFN
RVLGGGIVQGSLVLIGGDPGIGKSTLLLQMCAALSKEKKVLYITGEESLNQTKLRADRLDEDASALNVFAETDLEVIHEA
VKKVQPELIVVDSIQTIYHPEISSAPGSVSQVRESTQSLMHIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEG
DEHHAYRILRAVKNRFGSTNEMGIFEMKQAGLKSVPNPSEMFLEERSTNVPGSTIVATMEGTRPLLIEVQALVTPTTFNN
PRRMATGIDHNRLSLLMAVLEKKEGYLLQQQDAYIKVAGGVKLSEPAVDLSIIIATASSFKDQAVDGLDCFIGEVGLTGE
VRRVSRIEQRVQEAAKLGFKRVIIPKTNIGGWTFPENIEVIGVTSTNEALKYALKSK

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=612745 LGV34_RS10165 WP_037572997.1 2064963..2066336(-) (radA) [Staphylococcus chromogenes strain 76ME]
GTGGCCAAGAAAAAAGTCATATTTGAATGTACTGCATGTGGTTATCAATCTCCGAAGTGGATGGGGAAATGTCCTAACTG
TGGCGCATGGAATTCCATGGAAGAATCGTTAGAACAAAAAACAGCACACCCGAAACATGGGGTACGTACACAAAAGACGA
CACAATCAAAAATTCAAACGCTCAACGAAGTAAAGAATGAAAAAACACCACGTATTTTAACGAATAGCCAAGAGTTTAAC
CGTGTTTTAGGTGGCGGTATTGTCCAAGGTTCTCTTGTTTTAATCGGAGGAGACCCAGGGATAGGAAAGTCAACATTGTT
ACTTCAAATGTGCGCTGCGTTATCAAAAGAAAAGAAAGTGCTATATATTACTGGAGAAGAATCATTAAACCAAACTAAAT
TACGTGCCGATCGTTTAGATGAAGATGCTAGTGCTTTAAATGTATTTGCAGAAACGGATTTAGAGGTGATTCATGAAGCA
GTAAAAAAAGTACAACCCGAGCTCATCGTTGTAGACTCTATTCAAACGATTTATCACCCAGAAATTAGTTCTGCACCTGG
TTCTGTGTCTCAGGTACGTGAAAGTACACAAAGTTTAATGCATATTGCCAAACAGATGAATATTGCCACGTTTATCGTGG
GGCACGTGACAAAAGAAGGACAAATTGCGGGTCCTAGATTATTAGAACATATGGTGGATACCGTGCTTTATTTTGAAGGT
GATGAGCATCATGCTTATCGTATTTTACGTGCGGTGAAAAACCGCTTTGGTTCAACGAATGAAATGGGCATTTTTGAAAT
GAAACAAGCAGGTCTTAAAAGTGTCCCGAATCCTTCTGAAATGTTTTTAGAAGAGCGATCAACGAATGTTCCGGGGTCGA
CGATTGTCGCCACTATGGAAGGGACACGTCCGCTATTAATAGAAGTCCAAGCCCTCGTCACACCGACCACATTTAATAAT
CCTAGACGAATGGCGACGGGGATTGATCACAACCGTTTAAGTCTATTGATGGCCGTATTAGAGAAGAAAGAGGGGTATCT
GTTACAACAACAAGATGCCTACATCAAAGTGGCAGGTGGCGTCAAATTAAGTGAACCTGCTGTGGATTTAAGCATCATTA
TTGCGACAGCCTCAAGCTTTAAAGACCAAGCCGTTGATGGGTTAGACTGTTTTATTGGTGAAGTTGGTTTGACAGGTGAG
GTACGCCGTGTCTCTCGAATTGAGCAAAGAGTTCAAGAAGCAGCAAAATTAGGGTTTAAACGTGTGATTATACCGAAAAC
GAATATTGGGGGATGGACCTTCCCAGAAAACATTGAAGTTATCGGTGTGACCTCAACAAACGAAGCATTAAAATATGCTT
TGAAATCTAAATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(70-220)

Subunit ChlI of Mg-chelatase (ChlI)

(345-428)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

66.009

99.781

0.659
  radA Streptococcus pneumoniae Rx1

59.867

98.687

0.591
  radA Streptococcus pneumoniae D39

59.867

98.687

0.591
  radA Streptococcus pneumoniae R6

59.867

98.687

0.591
  radA Streptococcus pneumoniae TIGR4

59.867

98.687

0.591
  radA Streptococcus mitis NCTC 12261

59.867

98.687

0.591
  radA Streptococcus mitis SK321

59.867

98.687

0.591