Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | LGV34_RS05725 | Genome accession | NZ_CP084719 |
| Coordinates | 1165141..1166115 (+) | Length | 324 a.a. |
| NCBI ID | WP_107367476.1 | Uniprot ID | - |
| Organism | Staphylococcus chromogenes strain 76ME | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1160141..1171115
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LGV34_RS05690 (LGV34_05685) | rpmG | 1160594..1160758 (+) | 165 | WP_255201399.1 | 50S ribosomal protein L33 | - |
| LGV34_RS05695 (LGV34_05690) | - | 1160955..1161494 (+) | 540 | WP_037573917.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
| LGV34_RS05700 (LGV34_05695) | - | 1161512..1162951 (+) | 1440 | WP_268216595.1 | rhomboid family intramembrane serine protease | - |
| LGV34_RS05705 (LGV34_05700) | - | 1162953..1163156 (+) | 204 | WP_037573910.1 | YqgQ family protein | - |
| LGV34_RS05710 (LGV34_05705) | - | 1163153..1164139 (+) | 987 | WP_037573907.1 | ROK family glucokinase | - |
| LGV34_RS05715 (LGV34_05710) | - | 1164140..1164451 (+) | 312 | WP_037573905.1 | MTH1187 family thiamine-binding protein | - |
| LGV34_RS05720 (LGV34_05715) | - | 1164465..1165088 (+) | 624 | WP_107367477.1 | MBL fold metallo-hydrolase | - |
| LGV34_RS05725 (LGV34_05720) | comGA | 1165141..1166115 (+) | 975 | WP_107367476.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| LGV34_RS05730 (LGV34_05725) | comGB | 1166084..1167151 (+) | 1068 | WP_268216596.1 | competence type IV pilus assembly protein ComGB | - |
| LGV34_RS05735 (LGV34_05730) | comGC | 1167166..1167483 (+) | 318 | WP_037573894.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| LGV34_RS05740 (LGV34_05735) | comGD | 1167473..1167904 (+) | 432 | WP_051604961.1 | competence type IV pilus minor pilin ComGD | - |
| LGV34_RS05745 (LGV34_05740) | - | 1168097..1168582 (+) | 486 | WP_268216597.1 | competence type IV pilus minor pilin ComGF | - |
| LGV34_RS05750 (LGV34_05745) | - | 1168747..1169271 (+) | 525 | WP_375713364.1 | shikimate kinase | - |
| LGV34_RS05755 (LGV34_05750) | gcvT | 1169424..1170515 (+) | 1092 | WP_107366154.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 324 a.a. Molecular weight: 37031.81 Da Isoelectric Point: 7.8336
>NTDB_id=612734 LGV34_RS05725 WP_107367476.1 1165141..1166115(+) (comGA) [Staphylococcus chromogenes strain 76ME]
MQLLLDHVLQYAITHDASDVHFIPTASQVDVKLRIKDNLKTFDTLNLETYQRILTLLKFKSGLDVSSRHRAQSGRYIYEY
QELYYLRVSTLPLNLGTESCVIRITPQIFQTDKLQTTNDIRKIMEKKQGLILFSGPTGAGKSTLMYQMVVYAKEILNLNI
ITIEDPVEQLVNGITQISVNEKADITYGSSLKAILRCDPDVILIGEIRDKQIAKEVTQASLSGHLVLSTIHANDCQGVLL
RLIEMGITKQDLIQSLNMIVNQRLITTKNNGRRLVYETMTSLDIQYFLNHNFTLPDSFKSLSEKLYDLQKEGEIDEQTLR
KYKK
MQLLLDHVLQYAITHDASDVHFIPTASQVDVKLRIKDNLKTFDTLNLETYQRILTLLKFKSGLDVSSRHRAQSGRYIYEY
QELYYLRVSTLPLNLGTESCVIRITPQIFQTDKLQTTNDIRKIMEKKQGLILFSGPTGAGKSTLMYQMVVYAKEILNLNI
ITIEDPVEQLVNGITQISVNEKADITYGSSLKAILRCDPDVILIGEIRDKQIAKEVTQASLSGHLVLSTIHANDCQGVLL
RLIEMGITKQDLIQSLNMIVNQRLITTKNNGRRLVYETMTSLDIQYFLNHNFTLPDSFKSLSEKLYDLQKEGEIDEQTLR
KYKK
Nucleotide
Download Length: 975 bp
>NTDB_id=612734 LGV34_RS05725 WP_107367476.1 1165141..1166115(+) (comGA) [Staphylococcus chromogenes strain 76ME]
ATGCAGTTATTATTAGACCATGTATTACAGTATGCCATAACCCATGACGCTTCAGATGTCCACTTTATTCCAACCGCTTC
CCAAGTTGATGTAAAATTGAGAATAAAAGATAACTTAAAGACATTTGACACTCTGAATCTAGAGACATACCAAAGAATTT
TAACTTTACTCAAGTTCAAATCAGGTTTAGATGTTTCTTCACGCCATAGAGCTCAAAGTGGGCGATACATCTATGAGTAC
CAAGAACTGTATTATTTGCGTGTTTCTACATTACCACTAAACTTAGGCACTGAAAGTTGTGTAATAAGAATAACGCCGCA
AATATTTCAGACAGACAAACTTCAAACCACTAACGACATTCGTAAAATAATGGAGAAAAAACAAGGACTCATCTTATTTA
GTGGCCCAACAGGAGCTGGTAAAAGTACACTCATGTATCAAATGGTCGTTTATGCTAAAGAAATATTAAATTTAAATATT
ATTACTATAGAAGACCCTGTAGAGCAGCTCGTTAACGGCATTACTCAAATTTCTGTAAATGAAAAAGCAGACATCACATA
TGGTAGTTCTCTTAAAGCTATTTTACGTTGTGATCCTGACGTTATATTAATCGGGGAGATACGAGACAAACAAATTGCCA
AAGAAGTGACGCAAGCAAGTTTAAGTGGACATCTCGTCTTGTCAACGATTCATGCGAATGATTGTCAAGGTGTCTTATTA
AGACTCATTGAAATGGGCATTACTAAACAAGATTTAATACAATCATTAAATATGATCGTTAATCAAAGACTAATCACAAC
TAAAAACAACGGTAGAAGATTAGTCTATGAAACCATGACAAGTTTAGACATTCAATACTTTCTAAACCACAATTTTACAT
TGCCAGATTCATTTAAAAGTTTAAGTGAAAAACTTTATGACTTACAAAAGGAAGGGGAGATTGATGAACAAACTTTACGA
AAGTATAAAAAATAA
ATGCAGTTATTATTAGACCATGTATTACAGTATGCCATAACCCATGACGCTTCAGATGTCCACTTTATTCCAACCGCTTC
CCAAGTTGATGTAAAATTGAGAATAAAAGATAACTTAAAGACATTTGACACTCTGAATCTAGAGACATACCAAAGAATTT
TAACTTTACTCAAGTTCAAATCAGGTTTAGATGTTTCTTCACGCCATAGAGCTCAAAGTGGGCGATACATCTATGAGTAC
CAAGAACTGTATTATTTGCGTGTTTCTACATTACCACTAAACTTAGGCACTGAAAGTTGTGTAATAAGAATAACGCCGCA
AATATTTCAGACAGACAAACTTCAAACCACTAACGACATTCGTAAAATAATGGAGAAAAAACAAGGACTCATCTTATTTA
GTGGCCCAACAGGAGCTGGTAAAAGTACACTCATGTATCAAATGGTCGTTTATGCTAAAGAAATATTAAATTTAAATATT
ATTACTATAGAAGACCCTGTAGAGCAGCTCGTTAACGGCATTACTCAAATTTCTGTAAATGAAAAAGCAGACATCACATA
TGGTAGTTCTCTTAAAGCTATTTTACGTTGTGATCCTGACGTTATATTAATCGGGGAGATACGAGACAAACAAATTGCCA
AAGAAGTGACGCAAGCAAGTTTAAGTGGACATCTCGTCTTGTCAACGATTCATGCGAATGATTGTCAAGGTGTCTTATTA
AGACTCATTGAAATGGGCATTACTAAACAAGATTTAATACAATCATTAAATATGATCGTTAATCAAAGACTAATCACAAC
TAAAAACAACGGTAGAAGATTAGTCTATGAAACCATGACAAGTTTAGACATTCAATACTTTCTAAACCACAATTTTACAT
TGCCAGATTCATTTAAAAGTTTAAGTGAAAAACTTTATGACTTACAAAAGGAAGGGGAGATTGATGAACAAACTTTACGA
AAGTATAAAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Staphylococcus aureus MW2 |
58.204 |
99.691 |
0.58 |
| comGA | Staphylococcus aureus N315 |
58.204 |
99.691 |
0.58 |