Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   LGV34_RS03650 Genome accession   NZ_CP084719
Coordinates   772618..773340 (-) Length   240 a.a.
NCBI ID   WP_037575675.1    Uniprot ID   -
Organism   Staphylococcus chromogenes strain 76ME     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 767618..778340
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LGV34_RS03630 (LGV34_03630) - 768148..768795 (+) 648 WP_037575663.1 redox-sensing transcriptional repressor Rex -
  LGV34_RS03635 (LGV34_03635) - 768968..770050 (+) 1083 WP_119513305.1 YeeE/YedE family protein -
  LGV34_RS03640 (LGV34_03640) - 770072..770296 (+) 225 WP_268217052.1 sulfurtransferase TusA family protein -
  LGV34_RS03645 (LGV34_03645) - 770637..772121 (+) 1485 WP_037575672.1 sucrose-6-phosphate hydrolase -
  LGV34_RS03650 (LGV34_03650) agrA 772618..773340 (-) 723 WP_037575675.1 quorum-sensing response regulator AgrA Regulator
  LGV34_RS03655 (LGV34_03655) agrC 773355..774653 (-) 1299 WP_105963426.1 quorum-sensing sensor histidine kinase AgrC -
  LGV34_RS03660 (LGV34_03660) agrD 774685..774819 (-) 135 WP_069191685.1 cyclic lactone autoinducer peptide AgrD -
  LGV34_RS03665 (LGV34_03665) - 774822..775385 (-) 564 WP_037575678.1 accessory gene regulator AgrB -
  LGV34_RS03670 (LGV34_03670) - 776033..776830 (-) 798 WP_037575679.1 carbon-nitrogen family hydrolase -
  LGV34_RS03675 - 777010..778110 (+) 1101 WP_268217053.1 SdrH family protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 28255.30 Da        Isoelectric Point: 5.2218

>NTDB_id=612723 LGV34_RS03650 WP_037575675.1 772618..773340(-) (agrA) [Staphylococcus chromogenes strain 76ME]
MKILICEDDPKQRERMESIIRNYIMIEEKPMEIEISTSDPYALLEASKNMNDIGCYFLDIQLESDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKLAAMDFIFKDDVDELRTRVIDCLETALKRLDLLTKDNTVETMELKQGSNSVYVNYDDVM
FFESSPKSHRLIAHLDNRQIEFYGNLRELAQIDDRFFRCHNSFVLNRHNITHVDAKDRIVYFKNDEFCYVSVRNIKKIKN

Nucleotide


Download         Length: 723 bp        

>NTDB_id=612723 LGV34_RS03650 WP_037575675.1 772618..773340(-) (agrA) [Staphylococcus chromogenes strain 76ME]
TTGAAAATTTTAATTTGTGAAGATGATCCTAAACAAAGAGAACGAATGGAATCCATCATTCGAAATTATATTATGATTGA
AGAAAAACCTATGGAAATTGAAATTTCGACGAGTGATCCCTATGCTTTACTCGAAGCTTCTAAAAACATGAATGATATTG
GTTGTTATTTTTTAGATATTCAACTCGAGTCTGATATTAATGGGATTAAGTTAGGAAGCGAAATTAGAAAACATGATCCT
GTTGGTAATATTATTTTCGTTACAAGTCATAGTGAATTAACCTATTTAACATTCGTATACAAATTGGCGGCCATGGATTT
TATTTTTAAAGATGATGTCGATGAGTTACGCACGCGAGTCATTGATTGTCTTGAAACAGCTTTAAAACGTCTTGATTTGC
TTACTAAAGATAATACGGTTGAAACAATGGAATTAAAACAAGGGAGCAATTCTGTTTATGTGAATTACGACGATGTTATG
TTTTTTGAATCCTCTCCAAAGTCACATCGTCTTATTGCACATTTAGATAATCGTCAAATTGAATTTTATGGGAATTTAAG
AGAATTAGCACAAATCGATGATCGTTTTTTCCGATGTCATAATAGTTTTGTCTTAAATCGCCACAATATCACGCATGTGG
ATGCAAAAGATCGAATTGTCTATTTTAAAAATGATGAGTTTTGCTATGTCTCTGTAAGAAACATTAAGAAAATCAAAAAT
TAA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(151-239)

Response regulator receiver domain (Response_reg)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

81.933

99.167

0.813