Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   NP442_RS16430 Genome accession   NZ_CP101922
Coordinates   3355242..3355847 (-) Length   201 a.a.
NCBI ID   WP_001727574.1    Uniprot ID   -
Organism   Escherichia coli strain JCC-EE 7     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3350242..3360847
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NP442_RS16410 (NP442_16405) aes 3350279..3351238 (+) 960 WP_000801850.1 acetyl esterase -
  NP442_RS16415 (NP442_16410) hemH 3351235..3352197 (-) 963 WP_001250088.1 ferrochelatase -
  NP442_RS16420 (NP442_16415) adk 3352433..3353077 (-) 645 WP_001220233.1 adenylate kinase -
  NP442_RS16425 (NP442_16420) htpG 3353258..3355132 (-) 1875 WP_098717170.1 molecular chaperone HtpG -
  NP442_RS16430 (NP442_16425) recR 3355242..3355847 (-) 606 WP_001727574.1 recombination mediator RecR Machinery gene
  NP442_RS16435 (NP442_16430) ybaB 3355847..3356176 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  NP442_RS16440 (NP442_16435) dnaX 3356229..3358160 (-) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  NP442_RS16445 (NP442_16440) apt 3358289..3358840 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  NP442_RS16450 (NP442_16445) ybaN 3358993..3359370 (-) 378 WP_001188905.1 DUF454 family protein -
  NP442_RS16455 (NP442_16450) priC 3359440..3359967 (+) 528 WP_000844874.1 primosomal replication protein N'' -
  NP442_RS16460 (NP442_16455) rsmS 3359981..3360142 (+) 162 WP_000051153.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21931.99 Da        Isoelectric Point: 4.9097

>NTDB_id=612700 NP442_RS16430 WP_001727574.1 3355242..3355847(-) (recR) [Escherichia coli strain JCC-EE 7]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEPTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=612700 NP442_RS16430 WP_001727574.1 3355242..3355847(-) (recR) [Escherichia coli strain JCC-EE 7]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCCGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443