Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   LG401_RS10790 Genome accession   NZ_CP084711
Coordinates   2147433..2148236 (-) Length   267 a.a.
NCBI ID   WP_012010520.1    Uniprot ID   W6IDW7
Organism   Bacillus pumilus strain AR03     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2142433..2153236
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG401_RS10775 (LG401_10775) - 2144642..2144878 (+) 237 WP_034661240.1 DUF2627 domain-containing protein -
  LG401_RS10780 (LG401_10780) - 2144913..2145650 (-) 738 WP_066030681.1 glycerophosphodiester phosphodiesterase -
  LG401_RS10785 (LG401_10785) - 2145877..2146977 (-) 1101 WP_066030680.1 Rap family tetratricopeptide repeat protein -
  LG401_RS10790 (LG401_10790) spo0A 2147433..2148236 (-) 804 WP_012010520.1 sporulation transcription factor Spo0A Regulator
  LG401_RS10795 (LG401_10795) spoIVB 2148522..2149799 (-) 1278 WP_034661244.1 SpoIVB peptidase -
  LG401_RS10800 (LG401_10800) recN 2149998..2151731 (-) 1734 WP_060596818.1 DNA repair protein RecN Machinery gene
  LG401_RS10805 (LG401_10805) ahrC 2151765..2152214 (-) 450 WP_034661246.1 transcriptional regulator AhrC/ArgR -
  LG401_RS10810 (LG401_10810) - 2152377..2153231 (-) 855 WP_060596819.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29918.44 Da        Isoelectric Point: 6.3913

>NTDB_id=612627 LG401_RS10790 WP_012010520.1 2147433..2148236(-) (spo0A) [Bacillus pumilus strain AR03]
MEKIKVCVADDNRELVGLLTEYIEGQEDMEVLGVAYNGQECLTLFKDKEPDVLLLDIIMPHLDGLAVLERLRENNDMTKQ
PSVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNGTQVTHRSSSIQNSVLRNKPEPKRKNLDASITTI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMSKAKPTNSEFIAMVADRLRLEHRAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=612627 LG401_RS10790 WP_012010520.1 2147433..2148236(-) (spo0A) [Bacillus pumilus strain AR03]
GTGGAGAAAATTAAAGTGTGTGTAGCTGATGACAATCGAGAGCTTGTTGGCCTTTTGACAGAGTATATTGAGGGACAGGA
AGATATGGAAGTACTTGGCGTGGCGTATAATGGTCAGGAATGTCTGACATTATTTAAAGATAAAGAGCCCGACGTTCTCC
TCTTAGATATTATCATGCCTCATTTAGACGGTCTTGCTGTACTGGAACGCCTCCGTGAAAACAATGACATGACCAAACAG
CCAAGTGTGATTATGCTAACGGCGTTTGGACAAGAAGATGTCACGAAAAAAGCAGTTGATTTGGGCGCATCCTATTTCAT
CTTAAAGCCATTTGATATGGAAAACCTAGTCGGTCATATTCGTCAAGTCAGTGGAAACGGCACACAAGTCACACATCGAT
CTTCATCTATCCAAAACAGTGTCCTTCGGAACAAACCTGAACCGAAACGTAAAAACTTAGATGCGAGCATTACGACGATT
ATTCATGAGATTGGCGTACCCGCTCATATTAAAGGATATTTATACTTAAGAGAAGCGATTTCGATGGTGTACAATGACAT
TGAGCTTCTCGGAAGCATCACAAAAGTGTTGTACCCAGACATCGCGAAGAAATTTAACACGACTGCCAGCAGGGTAGAAC
GAGCGATTCGTCATGCGATTGAAGTTGCTTGGAGCAGAGGAAACATCGATTCCATTTCCTCACTCTTTGGTTATACAGTC
AGCATGTCTAAAGCGAAACCAACCAATTCTGAATTTATTGCTATGGTGGCTGATCGTCTGCGCTTAGAGCATAGAGCTAG
CTAG

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB W6IDW7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

88.433

100

0.888