Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   LG401_RS08440 Genome accession   NZ_CP084711
Coordinates   1701399..1701779 (+) Length   126 a.a.
NCBI ID   WP_060596689.1    Uniprot ID   -
Organism   Bacillus pumilus strain AR03     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1696399..1706779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG401_RS08430 (LG401_08430) - 1696890..1700033 (+) 3144 WP_226509470.1 bifunctional cytochrome P450/NADPH--P450 reductase -
  LG401_RS08435 (LG401_08435) - 1700222..1701130 (+) 909 WP_066030857.1 serine protease -
  LG401_RS08440 (LG401_08440) nucA/comI 1701399..1701779 (+) 381 WP_060596689.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  LG401_RS08445 (LG401_08445) - 1701927..1702775 (+) 849 WP_066030856.1 STAS domain-containing protein -
  LG401_RS08450 (LG401_08450) - 1702809..1703351 (-) 543 WP_034660768.1 IseA DL-endopeptidase inhibitor family protein -
  LG401_RS08455 (LG401_08455) - 1703646..1704083 (+) 438 WP_034660769.1 hypothetical protein -
  LG401_RS08460 (LG401_08460) lexA 1704131..1704751 (-) 621 WP_003212311.1 transcriptional repressor LexA -
  LG401_RS08465 (LG401_08465) yneA 1704911..1705222 (+) 312 WP_003211955.1 cell division suppressor protein YneA -
  LG401_RS08470 (LG401_08470) - 1705240..1705887 (+) 648 WP_003211322.1 recombinase family protein -
  LG401_RS08475 (LG401_08475) - 1705957..1706187 (+) 231 WP_034660771.1 DUF896 domain-containing protein -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13796.47 Da        Isoelectric Point: 8.4984

>NTDB_id=612625 LG401_RS08440 WP_060596689.1 1701399..1701779(+) (nucA/comI) [Bacillus pumilus strain AR03]
MGTLLGGFGEKHAAKGADRYDHVIQFPKERYPETGSHIQEAIRKGHSDVCTIDRNGADARRQESLKGIPTKPGFDRDEWP
MAVCLEGGKGASVQYVSPSDNRGAGSWVGHQISSYPDGKRILFIVK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=612625 LG401_RS08440 WP_060596689.1 1701399..1701779(+) (nucA/comI) [Bacillus pumilus strain AR03]
ATGGGCACGTTGTTAGGTGGATTTGGGGAGAAACATGCGGCAAAAGGTGCGGATCGATATGATCATGTCATTCAATTTCC
AAAGGAACGGTACCCTGAAACAGGCAGCCATATTCAAGAAGCCATTCGAAAAGGGCATTCAGATGTGTGTACGATAGACC
GAAATGGAGCAGATGCCCGCAGGCAAGAATCATTAAAAGGAATTCCGACTAAACCTGGCTTTGACCGGGATGAGTGGCCG
ATGGCGGTTTGTCTTGAGGGAGGAAAAGGTGCGAGTGTTCAATATGTCAGCCCATCTGATAATAGGGGAGCAGGCTCATG
GGTTGGACACCAGATTAGCAGTTATCCTGATGGGAAAAGAATTTTATTTATTGTGAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(29-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

57.983

94.444

0.548