Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   LG401_RS06695 Genome accession   NZ_CP084711
Coordinates   1347322..1347903 (+) Length   193 a.a.
NCBI ID   WP_034662739.1    Uniprot ID   A0AAE3WHV4
Organism   Bacillus pumilus strain AR03     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1342322..1352903
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG401_RS06665 (LG401_06665) dapD 1342430..1343140 (+) 711 WP_034662753.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  LG401_RS06670 (LG401_06670) - 1343225..1344355 (+) 1131 WP_060596145.1 N-acetyldiaminopimelate deacetylase -
  LG401_RS06675 (LG401_06675) - 1344406..1344648 (+) 243 WP_058014110.1 YkuS family protein -
  LG401_RS06680 (LG401_06680) - 1344675..1345484 (-) 810 WP_060596146.1 mechanosensitive ion channel family protein -
  LG401_RS06685 (LG401_06685) ahpA 1345757..1346299 (+) 543 WP_034662744.1 biofilm-specific peroxidase AhpA -
  LG401_RS06690 (LG401_06690) - 1346382..1346840 (+) 459 WP_034662741.1 TlpA disulfide reductase family protein -
  LG401_RS06695 (LG401_06695) rok 1347322..1347903 (+) 582 WP_034662739.1 hypothetical protein Regulator
  LG401_RS06700 (LG401_06700) - 1347953..1348870 (-) 918 WP_106047733.1 sigmaE regulated sporulation protein -
  LG401_RS06705 (LG401_06705) - 1348955..1349536 (+) 582 WP_060596148.1 molybdenum cofactor guanylyltransferase -
  LG401_RS06710 (LG401_06710) - 1349566..1350582 (+) 1017 WP_226509439.1 thiazole biosynthesis adenylyltransferase ThiF -
  LG401_RS06715 (LG401_06715) glp 1350592..1351869 (+) 1278 WP_223253258.1 gephyrin-like molybdotransferase Glp -
  LG401_RS06720 (LG401_06720) mobB 1351851..1352375 (+) 525 WP_034662725.1 molybdopterin-guanine dinucleotide biosynthesis protein B -
  LG401_RS06725 (LG401_06725) - 1352375..1352863 (+) 489 WP_223250461.1 molybdenum cofactor biosynthesis protein MoaE -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21812.80 Da        Isoelectric Point: 9.7309

>NTDB_id=612619 LG401_RS06695 WP_034662739.1 1347322..1347903(+) (rok) [Bacillus pumilus strain AR03]
MFNEREALRLRLEQLNEAEVKVIREYQIERDAIYAKLRELDRQGTGLVSDTKKEVRTERKTDSLPVLAELAAQEMRSYQP
PAQSQSNPASSLGTGQLNGVPVGIPEGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNM
TTFMQSLIKMYPEVKKPYRGQYILEGDIQTEDE

Nucleotide


Download         Length: 582 bp        

>NTDB_id=612619 LG401_RS06695 WP_034662739.1 1347322..1347903(+) (rok) [Bacillus pumilus strain AR03]
TTGTTTAATGAGAGGGAAGCGTTACGATTACGATTGGAACAACTAAACGAAGCAGAAGTAAAGGTCATCCGTGAATATCA
AATTGAGCGAGATGCGATTTATGCAAAATTAAGAGAATTAGACCGTCAAGGAACAGGTCTAGTGTCAGATACAAAAAAAG
AAGTGCGTACAGAAAGAAAGACGGATTCGCTGCCTGTATTAGCTGAACTGGCTGCACAAGAAATGAGAAGCTACCAGCCG
CCGGCACAATCACAATCAAATCCTGCATCATCTTTAGGAACAGGACAGCTAAACGGTGTACCTGTAGGTATTCCTGAAGG
ATCTACTAGACGCAGAAGAGGCACAGCCCGCCCTGGTTCAAAGGCAGCTAAGCTTCGTGAAGCTGCGATTAAAACGTTAA
AGCGTCATAATGCGGCGATTAAAAGCTCTGAGCTTCAAAAAGAGATTGAAAAAGAGAGCGGTCTTGAAATTCCAAATATG
ACAACGTTTATGCAAAGCTTAATTAAAATGTATCCTGAAGTGAAAAAGCCATATCGCGGACAGTATATTTTAGAAGGCGA
CATTCAAACAGAAGACGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

78.421

98.446

0.772