Detailed information NTG0612617

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: LG401_RS06410
• Genome accession: NZ_CP084711
• Coordinates: 1291954..1294056 (-)
• Length: 700 a.a.
• NCBI ID: WP_226509436.1
• Uniprot ID: -
• Organism: Bacillus pumilus strain AR03
• Function: degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 1286954..1299056

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LG401_RS06385 (LG401_06385)	-	1287542..1287784 (+)	243	WP_034662891.1	aspartyl-phosphate phosphatase Spo0E family protein	-
LG401_RS06390 (LG401_06390)	-	1287831..1289336 (-)	1506	WP_066030978.1	ATP-binding protein	-
LG401_RS06395 (LG401_06395)	-	1289542..1289997 (+)	456	WP_034662884.1	MarR family winged helix-turn-helix transcriptional regulator	-
LG401_RS06400 (LG401_06400)	motB	1290027..1290791 (-)	765	WP_060596120.1	flagellar motor protein MotB	-
LG401_RS06405 (LG401_06405)	motA	1290784..1291578 (-)	795	WP_034662877.1	flagellar motor stator protein MotA	-
LG401_RS06410 (LG401_06410)	clpC	1291954..1294056 (-)	2103	WP_226509436.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
LG401_RS06415 (LG401_06415)	-	1294300..1295343 (+)	1044	WP_106036740.1	hypothetical protein	-
LG401_RS06420 (LG401_06420)	queC	1295619..1296275 (+)	657	WP_127686876.1	7-cyano-7-deazaguanine synthase QueC	-
LG401_RS06425 (LG401_06425)	queD	1296276..1296716 (+)	441	WP_060596123.1	6-carboxytetrahydropterin synthase QueD	-
LG401_RS06430 (LG401_06430)	queE	1296709..1297440 (+)	732	WP_034662862.1	7-carboxy-7-deazaguanine synthase QueE	-
LG401_RS06435 (LG401_06435)	queF	1297456..1297953 (+)	498	WP_003211403.1	preQ(1) synthase	-
LG401_RS06440 (LG401_06440)	-	1298224..1298442 (+)	219	WP_034662856.1	hypothetical protein	-
LG401_RS06445 (LG401_06445)	-	1298566..1298754 (-)	189	WP_003211747.1	DUF2187 family protein	-

Sequence

Protein

• Length: 700 a.a.
• Molecular weight: 78064.70 Da
• Isoelectric Point: 5.0839

>NTDB_id=612617 LG401_RS06410 WP_226509436.1 1291954..1294056(-) (clpC) [Bacillus pumilus strain AR03]
MRCQHCQVNEATIRLNMQVNSSRSQMVLCEDCYTSLMEQSKMKMGPQLFGGSSFFSEQAGHAQSVEQPKQKGLLDELGRN
LTDGANAGLIDPVIGRDEEVARVIEILNRRNKNNPVLIGEPGVGKTAIAEGLALKIASGDVPNKLKNKQIYLLDVSSLVA
NTGIRGQFEERMKQLIKELQSRKNIILFVDEIHLLVGAGSAEGSMDAGNILKPALARGELQLVGATTLKEYRQIEKDAAL
ERRFQPVIVDEPTQDEAIEILKGIQDKYESYHGVTYSDEAIQACVQLSSRYIQDRHLPDKAIDLMDEAGSKANLSIDAAS
EDELTNRLREIAAEKQAALKEEQYEKAAKLRDEEEAIEARLQNKTNDKEHVVTAEAIQAIVEQKTGIPVGKLQADEQTKM
KEMDVRLKARVIGQEHAVEKVAKAVKRSRAGLKSKHRPTGSFLFVGPTGVGKTELSKTLAEELFGSRDAIIRLDMSEYME
KHSVSKLIGSPPGYVGHDEAGQLTEKVRRKPYSIILLDEIEKAHPDVQHMFLQIMEDGRLTDSQGRTVSFKDTVIIMTSN
AGSTDKTVKVGFQSDQEEAIEEQSLIDSLSAYFKPEFLNRFDSIIQFDSLDRDDLVKIVDLLLNELSEQLKEQHLTVHVT
KEAKEKIAELGYHPAFGARPLRRTIQEHVEDQMTEILLEEEKLSGFTVDVEDNEIVVKKG

Nucleotide

• Length: 2103 bp

>NTDB_id=612617 LG401_RS06410 WP_226509436.1 1291954..1294056(-) (clpC) [Bacillus pumilus strain AR03]
ATGCGTTGTCAACATTGTCAAGTAAATGAAGCAACTATTCGCCTGAATATGCAAGTAAATTCGTCCCGGAGCCAAATGGT
TTTATGTGAAGACTGCTACACCTCTTTGATGGAGCAATCAAAAATGAAAATGGGACCTCAATTGTTCGGGGGAAGCTCAT
TCTTCTCTGAGCAAGCAGGACATGCACAAAGCGTAGAGCAGCCAAAGCAAAAAGGCTTACTCGATGAACTTGGCCGGAAT
TTAACAGATGGCGCAAATGCTGGTTTAATTGATCCAGTCATCGGCCGTGATGAAGAAGTCGCAAGAGTCATTGAAATTTT
AAATAGAAGAAATAAAAATAACCCTGTTCTGATTGGTGAACCAGGTGTTGGGAAAACAGCGATCGCTGAAGGACTCGCAC
TGAAAATTGCAAGTGGCGATGTACCAAATAAATTAAAGAACAAACAAATCTATTTATTAGATGTCTCCTCCCTTGTAGCG
AATACGGGGATACGTGGTCAATTTGAGGAAAGAATGAAGCAGTTAATTAAAGAACTGCAAAGCCGTAAAAATATTATCTT
ATTTGTAGATGAAATCCATCTTCTTGTAGGCGCAGGATCTGCCGAAGGGTCAATGGATGCTGGAAACATCTTAAAACCAG
CCCTTGCACGAGGCGAGCTTCAGCTAGTAGGTGCGACGACATTAAAAGAATATCGTCAAATTGAAAAAGATGCCGCCCTT
GAACGACGCTTCCAGCCCGTCATTGTGGATGAGCCAACACAAGATGAAGCGATCGAGATTTTAAAAGGCATTCAAGATAA
GTACGAAAGTTATCATGGCGTCACTTATTCAGACGAAGCTATTCAAGCGTGTGTTCAATTATCTTCCCGGTATATTCAAG
ACCGTCATTTGCCGGATAAAGCCATTGATTTAATGGATGAAGCAGGTTCAAAAGCGAACCTCTCCATTGATGCAGCAAGT
GAAGATGAACTAACGAATCGTCTGAGAGAAATTGCTGCTGAAAAACAAGCTGCTTTAAAAGAAGAACAATACGAAAAAGC
AGCGAAGCTTCGAGATGAAGAAGAAGCCATTGAAGCAAGACTTCAAAACAAAACAAATGACAAAGAACATGTCGTCACAG
CAGAAGCCATTCAAGCCATTGTGGAACAAAAAACAGGCATCCCTGTCGGCAAACTGCAAGCAGACGAACAAACCAAAATG
AAAGAAATGGACGTCCGCTTAAAAGCACGGGTGATTGGTCAGGAACATGCGGTTGAAAAAGTGGCGAAAGCTGTGAAAAG
AAGCAGAGCCGGCTTAAAATCGAAACATAGACCAACAGGCTCCTTCCTATTCGTTGGACCAACAGGTGTCGGGAAAACCG
AATTGTCAAAAACGCTAGCTGAAGAATTATTCGGTTCAAGAGATGCGATCATCCGTTTAGATATGAGTGAGTACATGGAG
AAACACTCAGTATCCAAGCTCATTGGTTCTCCTCCTGGTTATGTTGGACATGATGAAGCGGGTCAGCTGACGGAAAAAGT
GCGCAGAAAACCATACAGCATCATTTTGCTGGATGAAATCGAAAAAGCACATCCTGATGTGCAGCATATGTTCCTTCAAA
TCATGGAAGATGGCCGGTTAACAGACAGCCAAGGCAGAACCGTCAGCTTTAAAGATACAGTCATCATCATGACAAGTAAC
GCAGGCAGCACAGATAAAACGGTCAAAGTCGGCTTCCAGTCTGATCAGGAAGAAGCGATTGAGGAACAATCACTCATTGA
TTCACTCAGCGCCTATTTCAAGCCAGAATTCTTGAACCGTTTTGACAGCATCATTCAGTTTGACTCATTAGATAGAGATG
ATTTAGTGAAGATTGTGGATCTTCTGCTCAATGAGCTGTCAGAGCAATTAAAAGAGCAACATTTAACAGTCCATGTGACA
AAAGAAGCGAAAGAAAAAATTGCAGAACTTGGATATCACCCTGCATTTGGTGCTCGTCCACTGCGAAGAACCATTCAAGA
GCATGTTGAAGATCAAATGACGGAAATATTGCTTGAAGAAGAAAAGCTTTCAGGATTTACTGTAGATGTTGAAGATAACG
AAATTGTAGTAAAAAAAGGATAA

Domains

Predicted by InterproScan.

• ATPase family associated with various cellular activities (AAA) (AAA) (116-248)

• AAA lid domain (AAA_lid_9) (253-353)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (610-685)

• AAA domain (Cdc48 subfamily) (AAA_2) (437-604)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Lactococcus lactis subsp. cremoris KW2	56.504	100	0.596
clpE	Streptococcus mutans UA159	57.459	100	0.594
clpE	Streptococcus pneumoniae Rx1	55.525	100	0.574
clpE	Streptococcus pneumoniae D39	55.525	100	0.574
clpE	Streptococcus pneumoniae R6	55.525	100	0.574
clpE	Streptococcus pneumoniae TIGR4	55.525	100	0.574
clpC	Bacillus subtilis subsp. subtilis str. 168	53.582	95.714	0.513
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	47.222	92.571	0.437
clpC	Streptococcus thermophilus LMD-9	45.75	92.429	0.423
clpC	Streptococcus thermophilus LMG 18311	45.595	92.429	0.421
clpC	Streptococcus mutans UA159	43.865	93.143	0.409
clpC	Streptococcus pneumoniae TIGR4	44.795	90.571	0.406
clpC	Streptococcus pneumoniae Rx1	44.992	89.857	0.404
clpC	Streptococcus pneumoniae D39	44.992	89.857	0.404